Os03g0717000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TMK protein precursor.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0717000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to TMK protein precursor.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.32 | 0.586 | 8.89 | -0.16 | 1.03 | 1.49 | -0.813 | 0.496 | -0.0501 | 13.6 | 25.32 | 731 | -- | -- |
| 155.37 | 0.581 | 8.9 | -0.239 | 1.04 | 1.54 | -0.813 | -- | -0.0664 | 13.6 | 25.4 | 740 | -- | -- |
| 156.82 | 0.583 | 8.85 | 0.0223 | 1.19 | 1.24 | -- | 1.58 | 0.0691 | 14.4 | 26.28 | 909 | -- | -- |
| 156.99 | 0.584 | 8.88 | -0.274 | 1.17 | 1.38 | -- | -- | 0.0345 | 14.3 | 26.96 | 910 | -- | -- |
| 181.22 | 0.627 | 9.03 | -0.613 | -- | 2.1 | -- | -1.87 | -0.439 | -- | 23.04 | 218 | -- | -- |
| 205.89 | 0.673 | 8.89 | 0.0697 | 1.15 | -- | -0.598 | -- | 0.0294 | 15.5 | -- | -- | -- | -- |
| 206.94 | 0.674 | 8.9 | 0.059 | 1.15 | -- | -- | -- | 0.0261 | 15.6 | -- | -- | -- | -- |
| 182.83 | 0.63 | 8.95 | -0.338 | -- | 1.89 | -- | -- | -0.254 | -- | 23.04 | 225 | -- | -- |
| 158.48 | 0.586 | 8.88 | -- | 1.19 | 1.27 | -- | -- | 0.0862 | 14.6 | 27.63 | 935 | -- | -- |
| 280.41 | 0.782 | 8.89 | 0.0108 | -- | -- | -- | -- | -0.00441 | -- | -- | -- | -- | -- |
| 207.03 | 0.673 | 8.9 | -- | 1.15 | -- | -- | -- | 0.0195 | 15.6 | -- | -- | -- | -- |
| 185.68 | 0.635 | 8.94 | -- | -- | 1.83 | -- | -- | -0.203 | -- | 23.2 | 229 | -- | -- |
| 280.41 | 0.782 | 8.89 | -- | -- | -- | -- | -- | -0.00561 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.59 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 17 |
| 5 | 153.99 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 21 |
| 9 | 154.63 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 11 |
| 13 | 154.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 17 | 154.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 34 | 155.11 | temperature | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 43 | 155.23 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 20 |
| 45 | 155.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 50 | 155.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 57 | 155.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 71 | 155.50 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 80 | 155.71 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 22 |
| 102 | 155.98 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 17 |
| 115 | 156.31 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 17 |
| 137 | 156.54 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |
| 144 | 156.64 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 18 |
| 154 | 156.70 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 163 | 156.79 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 166 | 156.79 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 170 | 156.80 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 173 | 156.80 | temperature | 25 | 720 | > th | dose dependent | sin | 21 | NA |
| 174 | 156.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 177 | 156.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 202 | 156.95 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 15 |
| 206 | 156.98 | humidity | 60 | 1440 | > th | dose independent | sin | 16 | NA |
| 208 | 156.99 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 217 | 157.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 274 | 157.39 | humidity | 60 | 1440 | < th | dose independent | sin | 16 | NA |
| 298 | 157.58 | temperature | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 327 | 157.76 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 353 | 157.93 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 363 | 157.99 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 385 | 158.10 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 6 |
| 388 | 158.11 | humidity | 90 | 270 | < th | dose dependent | sin | 20 | NA |
| 392 | 158.13 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 414 | 158.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 423 | 158.34 | temperature | 30 | 720 | < th | dose independent | sin | 18 | NA |
| 445 | 158.40 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 455 | 158.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 456 | 158.45 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 23 |
| 471 | 158.54 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 488 | 158.55 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 513 | 158.71 | humidity | 70 | 1440 | < th | dose dependent | sin | 14 | NA |
| 515 | 158.72 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 623 | 158.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 628 | 158.84 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 655 | 158.93 | temperature | 30 | 720 | > th | dose independent | sin | 18 | NA |
| 757 | 159.12 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 763 | 159.13 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 943 | 159.28 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 959 | 159.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |