FiT-DB / Search/ Help/ Sample detail

Os03g0716900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.89 (0.0349) R2 : 0.656
β1 : -1.32 (0.132) R2dD : 0.0844 R2D : 0.0295
β2 : 2.04 (0.0893) R2dC : 0.418 R2C : 0.518
β3 : -2.07 (0.197) R2dE : 0.0991 R2E : 0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.406 (0.0769) R2dN8 : 0.0309 R2N8 : -0.00881
σ : 0.647
deviance : 192.87
__
_____
C
peak time of C : 15.2
E
wheather : temperature
threshold : 22.2
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.53 0.614 7.91 -1.48 2.08 -1.57 -1.61 2.33 -0.432 15.1 22.48 11 -- --
176.57 0.624 7.88 -1.25 2.04 -1.93 -2.28 -- -0.397 15 22.48 11 -- --
177.43 0.62 7.91 -1.58 2.1 -1.36 -- 3.39 -0.432 15.1 22.52 10 -- --
192.87 0.647 7.89 -1.32 2.04 -2.07 -- -- -0.406 15.2 22.2 4 -- --
304.06 0.812 8.04 -2.42 -- -3.94 -- 4.94 -0.948 -- 70.94 22 -- --
218.96 0.694 7.82 -0.88 2.26 -- -2.38 -- -0.171 14.8 -- -- -- --
237.96 0.722 7.83 -0.936 2.26 -- -- -- -0.184 15 -- -- -- --
322.46 0.836 7.97 -1.71 -- -3.27 -- -- -0.798 -- 30.9 7 -- --
234.82 0.714 7.84 -- 2.12 -1.5 -- -- -0.213 15.2 22.24 3 -- --
532.05 1.08 7.84 -1.03 -- -- -- -- -0.243 -- -- -- -- --
261.04 0.756 7.81 -- 2.28 -- -- -- -0.0799 15 -- -- -- --
397.43 0.932 7.91 -- -- -2.8 -- -- -0.541 -- 30.9 7 -- --
560.15 1.1 7.81 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.03 temperature 20 270 > th dose independent rect. 9 16
2 166.08 temperature 10 270 > th dose dependent rect. 9 15
3 166.15 temperature 15 270 > th dose dependent rect. 8 17
18 169.74 temperature 15 10 > th dose dependent rect. 6 23
21 170.05 temperature 15 270 > th dose dependent rect. 6 20
28 170.44 temperature 30 90 < th dose dependent rect. 11 22
34 170.88 temperature 25 10 < th dose dependent rect. 11 21
38 171.00 temperature 20 90 < th dose dependent rect. 24 23
43 171.21 temperature 20 90 > th dose independent rect. 20 23
46 171.45 temperature 20 30 > th dose independent rect. 6 23
51 171.62 temperature 20 10 < th dose dependent rect. 24 23
62 172.47 temperature 20 90 > th dose independent rect. 21 21
68 172.84 humidity 60 10 > th dose dependent sin 20 NA
69 172.86 temperature 20 90 > th dose independent sin 21 NA
89 173.31 temperature 20 90 < th dose independent rect. 10 22
100 173.67 temperature 25 10 < th dose dependent rect. 13 23
103 173.77 temperature 25 10 < th dose dependent no NA NA
108 173.82 humidity 90 10 < th dose dependent rect. 6 13
110 173.85 temperature 25 10 < th dose dependent rect. 15 23
121 173.94 temperature 25 10 < th dose dependent rect. 7 23
122 173.95 temperature 25 10 < th dose dependent rect. 3 23
123 173.96 temperature 20 270 > th dose independent rect. 6 21
129 174.04 temperature 25 10 < th dose dependent rect. 17 23
130 174.04 temperature 25 10 < th dose dependent rect. 19 23
131 174.11 temperature 25 10 < th dose dependent sin 18 NA
138 174.30 temperature 20 720 < th dose independent rect. 9 6
152 174.45 temperature 20 10 < th dose independent rect. 11 22
159 174.54 temperature 15 90 > th dose dependent rect. 20 23
167 174.67 temperature 20 10 < th dose independent rect. 11 19
172 174.72 humidity 90 10 < th dose dependent rect. 4 15
173 174.72 temperature 25 10 < th dose dependent rect. 5 23
177 174.78 temperature 25 30 < th dose dependent rect. 21 23
181 174.83 temperature 20 10 > th dose independent rect. 17 23
184 174.85 temperature 15 10 > th dose dependent rect. 17 23
190 174.89 temperature 25 270 < th dose dependent rect. 10 11
192 174.91 temperature 20 90 < th dose independent rect. 23 23
214 175.23 temperature 20 90 > th dose independent rect. 21 18
222 175.40 temperature 10 10 > th dose dependent no NA NA
227 175.47 temperature 20 10 > th dose independent rect. 8 21
232 175.51 temperature 30 270 < th dose dependent rect. 13 17
253 175.72 temperature 20 90 < th dose independent rect. 1 22
257 175.75 temperature 10 90 > th dose dependent no NA NA
278 176.00 temperature 20 10 > th dose independent rect. 21 19
284 176.07 temperature 10 270 > th dose dependent rect. 17 23
290 176.10 humidity 90 270 < th dose independent sin 23 NA
306 176.31 humidity 90 10 < th dose dependent rect. 17 23
335 176.58 temperature 30 90 < th dose dependent rect. 15 18
343 176.68 temperature 20 90 > th dose independent no NA NA
345 176.73 humidity 90 10 < th dose dependent rect. 6 17
353 176.82 humidity 80 270 < th dose independent sin 4 NA
354 176.83 humidity 90 10 < th dose dependent rect. 24 19
360 176.88 temperature 20 90 < th dose independent no NA NA
372 176.94 temperature 20 90 < th dose independent rect. 13 23
374 176.96 temperature 20 90 < th dose independent rect. 7 23
381 177.01 temperature 20 10 < th dose independent rect. 11 17
396 177.10 temperature 30 10 < th dose dependent rect. 15 17
410 177.18 temperature 20 10 < th dose independent rect. 1 23
419 177.23 temperature 15 90 > th dose dependent rect. 8 23
421 177.24 humidity 90 10 < th dose dependent rect. 21 22
423 177.25 humidity 90 10 < th dose dependent rect. 6 19
425 177.26 humidity 90 10 < th dose dependent sin 22 NA
437 177.31 temperature 20 90 < th dose independent rect. 3 23
453 177.40 temperature 15 10 > th dose dependent rect. 8 21
467 177.49 temperature 20 720 < th dose independent rect. 9 12
476 177.52 humidity 60 10 > th dose dependent rect. 10 11
479 177.55 temperature 20 90 < th dose independent rect. 15 23
492 177.63 temperature 20 90 < th dose independent rect. 5 23
497 177.65 humidity 90 10 < th dose dependent rect. 4 19
500 177.66 temperature 15 10 > th dose dependent rect. 20 23
538 177.84 temperature 20 90 < th dose independent rect. 17 23
545 177.88 temperature 20 10 < th dose independent rect. 7 23
549 177.89 temperature 20 90 < th dose independent rect. 21 23
568 177.95 humidity 80 270 > th dose dependent rect. 9 10
583 178.00 temperature 20 10 > th dose independent rect. 10 16
585 178.00 temperature 20 10 < th dose independent rect. 15 23
593 178.04 temperature 20 10 < th dose independent no NA NA
601 178.08 humidity 90 10 < th dose dependent rect. 4 21
603 178.09 temperature 20 10 < th dose independent rect. 3 23
605 178.09 temperature 10 10 > th dose dependent sin 18 NA
610 178.14 temperature 20 10 < th dose independent rect. 5 23
619 178.18 temperature 20 10 < th dose independent rect. 17 23
635 178.27 temperature 20 10 < th dose independent rect. 19 23
644 178.31 temperature 20 10 < th dose independent rect. 23 23
653 178.36 temperature 20 10 < th dose independent sin 18 NA
669 178.43 humidity 90 270 < th dose dependent sin 2 NA
719 178.62 temperature 20 90 < th dose independent sin 19 NA
720 178.62 temperature 20 10 < th dose independent rect. 13 23
723 178.63 temperature 20 10 < th dose independent rect. 21 23
724 178.63 humidity 50 270 > th dose dependent rect. 10 10
764 178.76 humidity 60 10 > th dose dependent rect. 13 23
853 179.09 humidity 60 10 > th dose dependent no NA NA
861 179.11 humidity 90 10 < th dose dependent rect. 6 23
879 179.21 temperature 20 90 < th dose independent rect. 11 12
889 179.24 humidity 80 270 < th dose independent rect. 3 12
905 179.30 humidity 60 10 > th dose dependent rect. 15 23
917 179.34 humidity 90 10 < th dose dependent rect. 24 23
930 179.39 temperature 20 90 < th dose independent rect. 3 20
946 179.43 humidity 60 10 > th dose dependent rect. 11 23
949 179.44 humidity 60 10 > th dose dependent rect. 5 23