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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0715400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF747, CMV receptor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0434) R2 : 0.00166
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0795 (0.0913) R2dN8 : 0.00214 R2N8 : 0.00166
σ : 0.816
deviance : 305.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.59 0.798 3.36 -0.0637 0.187 0.0147 -0.367 3.25 0.111 5.47 0.03295 3375 -- --
292.66 0.797 3.41 -0.137 0.179 0.863 -0.445 -- 0.136 5.24 0.1234 2370 -- --
288.92 0.792 3.36 -0.063 0.184 0.00651 -- 3.31 0.112 5.57 0.00314 3377 -- --
292.91 0.797 3.41 -0.154 0.195 0.838 -- -- 0.138 5.32 0.2203 2370 -- --
290.69 0.794 3.36 -0.0572 -- 0.00535 -- 3.36 0.116 -- 3.833e-05 3377 -- --
303.36 0.817 3.42 0.087 0.208 -- -0.22 -- 0.0837 5.04 -- -- -- --
303.48 0.816 3.42 0.0872 0.207 -- -- -- 0.0847 4.99 -- -- -- --
294.87 0.8 3.41 -0.151 -- 0.843 -- -- 0.142 -- 0.2191 2370 -- --
293.44 0.798 3.41 -- 0.195 0.757 -- -- 0.147 5.38 0.2815 2370 -- --
305.72 0.817 3.42 0.0947 -- -- -- -- 0.09 -- -- -- -- --
303.68 0.815 3.42 -- 0.208 -- -- -- 0.075 4.97 -- -- -- --
295.39 0.8 3.41 -- -- 0.774 -- -- 0.152 -- 0.2748 2370 -- --
305.96 0.816 3.43 -- -- -- -- -- 0.0795 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 285.88 wind 1e+00 14400 < th dose dependent rect. 10 1
2 286.91 humidity 6e+01 1440 > th dose dependent rect. 16 6
3 286.92 wind 1e+00 14400 > th dose independent rect. 10 1
4 286.97 precipitation 1e-01 43200 < th dose independent rect. 17 1
5 286.97 precipitation 1e-01 43200 < th dose dependent rect. 17 1
7 286.99 wind 1e+00 14400 < th dose independent rect. 10 1
10 287.02 precipitation 1e-01 43200 > th dose independent rect. 17 1
11 287.15 precipitation 1e-01 43200 > th dose dependent rect. 17 1
12 287.22 humidity 7e+01 1440 > th dose dependent rect. 16 3
13 287.24 radiation 3e+01 1440 < th dose dependent rect. 18 2
18 287.40 precipitation 1e-01 4320 > th dose independent rect. 16 6
19 287.41 precipitation 1e-01 4320 < th dose independent rect. 16 6
20 287.41 precipitation 1e-01 4320 < th dose dependent rect. 16 6
22 287.43 humidity 9e+01 1440 > th dose independent rect. 19 3
31 287.66 wind 9e+00 43200 > th dose dependent rect. 17 13
34 287.71 humidity 9e+01 1440 < th dose independent rect. 17 5
44 287.76 precipitation 1e-01 4320 > th dose dependent rect. 16 7
47 287.84 radiation 1e+00 1440 < th dose independent rect. 17 3
49 287.84 radiation 1e+00 1440 < th dose independent rect. 17 7
60 287.89 humidity 9e+01 1440 < th dose independent rect. 19 3
61 287.89 humidity 9e+01 1440 < th dose dependent rect. 16 6
74 287.92 radiation 1e+00 1440 < th dose independent rect. 17 12
79 287.96 humidity 8e+01 1440 > th dose independent rect. 17 1
84 287.97 radiation 2e+01 1440 < th dose dependent rect. 18 6
87 287.98 wind 9e+00 43200 > th dose dependent rect. 20 10
92 288.00 precipitation 1e-01 4320 > th dose dependent rect. 11 14
96 288.02 precipitation 1e-01 4320 > th dose dependent rect. 11 12
100 288.03 precipitation 1e-01 4320 > th dose dependent rect. 9 16
103 288.05 precipitation 1e-01 4320 > th dose dependent rect. 13 10
104 288.05 precipitation 1e-01 4320 > th dose dependent rect. 13 12
110 288.07 precipitation 1e-01 4320 > th dose dependent rect. 9 14
122 288.10 precipitation 1e-01 4320 > th dose dependent sin 21 NA
128 288.11 wind 9e+00 43200 > th dose dependent rect. 19 3
129 288.11 radiation 1e+00 43200 < th dose dependent rect. 20 8
132 288.12 precipitation 1e-01 4320 < th dose independent rect. 11 7
134 288.12 precipitation 1e-01 4320 < th dose dependent rect. 11 7
139 288.14 precipitation 1e-01 4320 < th dose independent rect. 11 11
141 288.14 precipitation 1e-01 4320 < th dose dependent rect. 11 11
142 288.15 precipitation 1e-01 4320 > th dose independent rect. 11 11
159 288.20 radiation 1e+00 43200 < th dose dependent rect. 24 4
160 288.21 precipitation 1e-01 4320 > th dose independent rect. 11 7
163 288.22 precipitation 1e-01 4320 > th dose independent sin 20 NA
164 288.22 precipitation 1e-01 4320 < th dose independent sin 20 NA
169 288.22 precipitation 1e-01 4320 < th dose dependent sin 20 NA
171 288.23 wind 7e+00 43200 > th dose independent rect. 19 2
172 288.23 wind 7e+00 43200 < th dose independent rect. 19 2
176 288.24 precipitation 1e-01 4320 > th dose independent rect. 9 13
178 288.25 humidity 8e+01 1440 > th dose independent rect. 16 3
180 288.25 precipitation 1e-01 4320 < th dose independent rect. 9 13
182 288.25 precipitation 1e-01 4320 < th dose dependent rect. 9 13
184 288.26 humidity 9e+01 1440 > th dose independent rect. 17 5
196 288.29 radiation 1e+00 1440 > th dose independent rect. 18 1
256 288.39 wind 9e+00 43200 > th dose independent rect. 18 12
259 288.40 wind 9e+00 43200 < th dose independent rect. 18 11
260 288.40 wind 1e+00 43200 < th dose dependent rect. 20 1
268 288.42 atmosphere 1e+03 43200 < th dose dependent rect. 21 1
301 288.50 wind 9e+00 43200 > th dose independent rect. 17 14
345 288.55 humidity 9e+01 1440 < th dose dependent rect. 18 1
358 288.57 humidity 8e+01 1440 < th dose independent rect. 16 3
365 288.58 wind 9e+00 43200 > th dose dependent rect. 17 8
397 288.64 radiation 1e+00 43200 < th dose dependent rect. 20 5
476 288.80 wind 9e+00 43200 > th dose independent rect. 19 9
491 288.82 precipitation 1e-01 4320 > th dose dependent rect. 11 8
502 288.85 atmosphere 1e+03 43200 > th dose independent rect. 20 1
536 288.88 atmosphere 1e+03 43200 < th dose independent rect. 20 1
565 288.92 humidity 8e+01 1440 < th dose independent rect. 17 1
577 288.93 precipitation 1e-01 4320 > th dose dependent rect. 7 12
637 289.01 humidity 9e+01 1440 > th dose dependent rect. 21 1
783 289.21 atmosphere 1e+03 43200 > th dose independent rect. 2 1
818 289.25 atmosphere 1e+03 43200 < th dose independent rect. 2 1
860 289.29 atmosphere 1e+03 43200 > th dose independent rect. 23 4
935 289.35 wind 9e+00 43200 < th dose independent rect. 19 6
998 289.40 wind 9e+00 43200 > th dose independent rect. 17 4