Os03g0713200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0713200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.08 | 0.691 | 9.42 | -0.867 | 3.4 | 1.27 | 1.18 | 4.67 | -1.03 | 19.4 | 32.02 | 130 | -- | -- |
| 233.19 | 0.711 | 9.41 | -0.899 | 3.2 | 0.8 | 0.742 | -- | -1.08 | 19.5 | 4.505 | 323 | -- | -- |
| 219.58 | 0.69 | 9.42 | -0.879 | 3.4 | 1.27 | -- | 4.61 | -1.03 | 19.3 | 33.99 | 129 | -- | -- |
| 233.66 | 0.712 | 9.4 | -0.903 | 3.23 | 0.868 | -- | -- | -1.02 | 19.6 | 4.282 | 288 | -- | -- |
| 417.21 | 0.951 | 9.4 | -1.15 | -- | 3.43 | -- | 1.15 | -1.39 | -- | -159.2 | 801 | -- | -- |
| 242.2 | 0.73 | 9.39 | -0.874 | 3.4 | -- | 0.852 | -- | -0.977 | 19.1 | -- | -- | -- | -- |
| 244.1 | 0.732 | 9.39 | -0.891 | 3.41 | -- | -- | -- | -0.975 | 19.1 | -- | -- | -- | -- |
| 419.13 | 0.954 | 9.39 | -1.16 | -- | 3.45 | -- | -- | -1.39 | -- | -133.1 | 795 | -- | -- |
| 256.14 | 0.745 | 9.38 | -- | 3.25 | 0.797 | -- | -- | -0.941 | 19.5 | 3.477 | 283 | -- | -- |
| 854.94 | 1.37 | 9.31 | -0.958 | -- | -- | -- | -- | -1.04 | -- | -- | -- | -- | -- |
| 265.01 | 0.761 | 9.36 | -- | 3.42 | -- | -- | -- | -0.876 | 19 | -- | -- | -- | -- |
| 454.29 | 0.993 | 9.36 | -- | -- | 3.41 | -- | -- | -1.25 | -- | -130.3 | 791 | -- | -- |
| 879.13 | 1.38 | 9.29 | -- | -- | -- | -- | -- | -0.931 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.29 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 3 | 202.65 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 4 | 202.84 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 9 | 204.81 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 11 |
| 11 | 205.01 | temperature | 25.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 12 | 205.09 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 14 | 205.14 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 18 | 205.47 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 19 | 205.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 25 | 205.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 26 | 205.98 | temperature | 25.0 | 270 | > th | dose independent | sin | 4 | NA |
| 27 | 206.00 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 32 | 206.18 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 33 | 206.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 36 | 206.35 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 44 | 206.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 59 | 207.02 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 65 | 207.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 100 | 208.15 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 119 | 208.51 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 120 | 208.53 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 123 | 208.57 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 153 | 209.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 155 | 209.08 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 13 |
| 159 | 209.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 162 | 209.15 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 9 |
| 173 | 209.27 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 13 |
| 182 | 209.34 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 198 | 209.61 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 202 | 209.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 215 | 209.95 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 225 | 210.10 | wind | 5.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 230 | 210.14 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 271 | 210.52 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 276 | 210.54 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 7 |
| 296 | 210.76 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 3 |
| 322 | 211.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 334 | 211.14 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 7 |
| 368 | 211.36 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 6 |
| 374 | 211.40 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 411 | 211.75 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 455 | 212.12 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 463 | 212.17 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 464 | 212.17 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 465 | 212.17 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 468 | 212.17 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 474 | 212.17 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 476 | 212.17 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 562 | 212.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 6 |
| 563 | 212.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 577 | 212.99 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 578 | 213.00 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 18 |
| 581 | 213.00 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 611 | 213.25 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 20 |
| 620 | 213.32 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 631 | 213.39 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 632 | 213.40 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 654 | 213.60 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 660 | 213.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 663 | 213.69 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 696 | 213.95 | wind | 5.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 697 | 213.96 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 21 |
| 706 | 214.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 737 | 214.21 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 752 | 214.29 | radiation | 40.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 778 | 214.43 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 823 | 214.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 824 | 214.66 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 21 |
| 825 | 214.68 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 843 | 214.76 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 847 | 214.80 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 858 | 214.81 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 900 | 214.97 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 944 | 215.15 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 946 | 215.15 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 956 | 215.21 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 964 | 215.26 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 965 | 215.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 17 | 14 |