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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0712400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Atypical receptor-like kinase MARK.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0207) R2 : 0.0018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0396 (0.0437) R2dN8 : 0.00232 R2N8 : 0.0018
σ : 0.391
deviance : 70.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.83 0.363 2.96 -0.0731 0.27 0.9 0.0343 -0.647 0.0506 11.2 1015 663 -- --
59.9 0.36 2.97 -0.11 0.26 1.1 0.0109 -- 0.0402 11.2 1015 659 -- --
59.83 0.36 2.96 -0.0721 0.27 0.901 -- -0.687 0.0506 11.2 1015 660 -- --
59.84 0.36 2.96 -0.0662 0.269 1.12 -- -- 0.0499 11.1 1015 658 -- --
64.26 0.373 2.97 -0.0693 -- 0.837 -- -0.482 0.0486 -- 1015 674 -- --
65.1 0.378 2.97 -0.136 0.264 -- -0.0498 -- 0.026 11.2 -- -- -- --
65.12 0.378 2.97 -0.138 0.264 -- -- -- 0.0259 11.2 -- -- -- --
64.27 0.373 2.97 -0.0666 -- 1.03 -- -- 0.051 -- 1016 666 -- --
59.94 0.361 2.96 -- 0.265 1.15 -- -- 0.0544 11.2 1015 658 -- --
69.47 0.389 2.97 -0.144 -- -- -- -- 0.0236 -- -- -- -- --
65.62 0.379 2.97 -- 0.265 -- -- -- 0.0412 11.2 -- -- -- --
64.36 0.374 2.97 -- -- 1.08 -- -- 0.0558 -- 1016 666 -- --
70.02 0.391 2.97 -- -- -- -- -- 0.0396 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.62 wind 9 10 > th dose independent rect. 13 1
13 58.62 wind 9 10 > th dose dependent rect. 13 1
36 59.28 wind 9 270 > th dose independent rect. 22 16
37 59.31 wind 9 270 > th dose independent rect. 1 13
41 59.33 wind 9 270 > th dose independent rect. 10 3
43 59.33 wind 9 270 > th dose independent rect. 19 19
59 59.40 wind 9 270 > th dose dependent rect. 10 4
69 59.44 atmosphere 1015 720 < th dose independent rect. 12 15
72 59.47 wind 9 270 > th dose dependent rect. 22 16
74 59.50 wind 9 270 > th dose dependent rect. 1 13
104 59.65 wind 9 270 > th dose independent sin 7 NA
122 59.82 atmosphere 1015 720 < th dose independent rect. 20 23
123 59.83 atmosphere 1015 720 > th dose dependent sin 17 NA
125 59.83 atmosphere 1015 720 > th dose dependent rect. 2 20
126 59.83 atmosphere 1015 720 > th dose dependent rect. 1 23
127 59.84 atmosphere 1015 720 > th dose independent sin 14 NA
128 59.84 atmosphere 1015 720 < th dose independent rect. 20 15
129 59.84 atmosphere 1015 720 > th dose independent rect. 3 18
130 59.84 atmosphere 1015 720 > th dose independent rect. 1 23
134 59.84 atmosphere 1015 720 > th dose dependent sin 0 NA
138 59.85 atmosphere 1015 720 > th dose independent rect. 21 5
139 59.85 atmosphere 1015 720 > th dose independent rect. 20 7
166 59.88 atmosphere 1015 720 > th dose dependent rect. 22 3
169 59.89 atmosphere 1015 720 > th dose independent sin 0 NA
171 59.89 atmosphere 1015 720 > th dose independent rect. 2 20
174 59.89 atmosphere 1015 720 > th dose dependent rect. 20 6
193 59.90 atmosphere 1015 720 < th dose independent rect. 12 23
195 59.91 atmosphere 1015 720 < th dose independent no NA NA
203 59.92 atmosphere 1015 720 > th dose independent no NA NA
204 59.92 atmosphere 1015 720 > th dose independent rect. 23 2
352 59.93 atmosphere 1015 1440 < th dose independent rect. 23 1
373 59.94 wind 9 270 > th dose dependent sin 7 NA
384 59.95 atmosphere 1015 720 < th dose independent rect. 4 23
408 59.97 atmosphere 1015 720 > th dose dependent rect. 3 18
464 60.09 atmosphere 1015 720 < th dose independent sin 16 NA
466 60.09 atmosphere 1015 720 > th dose dependent no NA NA
626 60.15 atmosphere 1015 720 > th dose independent rect. 23 23
628 60.16 atmosphere 1015 720 < th dose independent sin 0 NA
640 60.19 atmosphere 1015 720 < th dose independent rect. 15 17
668 60.22 atmosphere 1015 720 < th dose independent rect. 20 7
690 60.28 wind 9 270 < th dose independent sin 4 NA
694 60.29 wind 9 270 < th dose independent sin 7 NA
695 60.29 atmosphere 1015 720 < th dose independent rect. 17 16
718 60.33 atmosphere 1015 720 < th dose independent rect. 15 23
732 60.37 atmosphere 1015 720 < th dose independent rect. 2 23
751 60.44 atmosphere 1015 720 < th dose independent rect. 6 23
786 60.50 atmosphere 1015 720 < th dose independent rect. 17 23
944 60.67 wind 9 10 > th dose independent rect. 19 19
973 60.71 atmosphere 1015 720 < th dose independent rect. 9 23
994 60.75 wind 7 10 > th dose dependent rect. 19 19