Os03g0711800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to IRE homolog 1 (Fragment).
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Os03g0711800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to IRE homolog 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.65 | 0.192 | 10.5 | 1.04 | 0.395 | -0.129 | -0.334 | 3.33 | 0.134 | 5.62 | 25.06 | 4239 | -- | -- |
| 19.56 | 0.206 | 10.6 | 0.169 | 0.379 | 0.21 | -0.325 | -- | -0.113 | 5.39 | 31.91 | 13169 | -- | -- |
| 16.8 | 0.191 | 10.5 | 1.11 | 0.386 | -0.191 | -- | 3.75 | 0.146 | 5.57 | 25.5 | 3361 | -- | -- |
| 19.24 | 0.204 | 10.7 | 0.184 | 0.407 | 0.297 | -- | -- | -0.154 | 5.72 | 31.34 | 19675 | -- | -- |
| 24.16 | 0.229 | 10.5 | 1.42 | -- | -0.313 | -- | 4.66 | 0.194 | -- | 26.8 | 2875 | -- | -- |
| 21.28 | 0.216 | 10.6 | 0.305 | 0.41 | -- | -0.271 | -- | -0.0302 | 5.59 | -- | -- | -- | -- |
| 21.46 | 0.217 | 10.6 | 0.304 | 0.408 | -- | -- | -- | -0.029 | 5.59 | -- | -- | -- | -- |
| 27.67 | 0.245 | 10.7 | 0.188 | -- | 0.31 | -- | -- | -0.152 | -- | 31 | 19884 | -- | -- |
| 20.1 | 0.209 | 10.7 | -- | 0.413 | 0.311 | -- | -- | -0.159 | 5.83 | 31.03 | 20763 | -- | -- |
| 30.12 | 0.256 | 10.6 | 0.317 | -- | -- | -- | -- | -0.0192 | -- | -- | -- | -- | -- |
| 23.9 | 0.229 | 10.6 | -- | 0.413 | -- | -- | -- | -0.0629 | 5.56 | -- | -- | -- | -- |
| 28.47 | 0.249 | 10.7 | -- | -- | 0.369 | -- | -- | -0.199 | -- | 31.01 | 19957 | -- | -- |
| 32.78 | 0.267 | 10.6 | -- | -- | -- | -- | -- | -0.0544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.55 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 11 | 16.63 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 12 | 16.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 18 |
| 14 | 16.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 18 | 16.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 16 |
| 39 | 16.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 43 | 16.68 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 47 | 16.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 19 |
| 64 | 16.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 22 |
| 71 | 16.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 73 | 16.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 80 | 16.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 11 |
| 82 | 16.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 124 | 16.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 15 |
| 131 | 16.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 18 |
| 135 | 16.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 18 |
| 153 | 16.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 178 | 16.72 | temperature | 25 | 4320 | > th | dose dependent | sin | 1 | NA |
| 180 | 16.72 | temperature | 15 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 221 | 16.74 | temperature | 25 | 4320 | > th | dose dependent | sin | 21 | NA |
| 247 | 16.75 | temperature | 25 | 4320 | > th | dose dependent | sin | 18 | NA |
| 296 | 16.78 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 375 | 16.84 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 410 | 16.85 | temperature | 15 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 411 | 16.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 11 |
| 435 | 16.86 | temperature | 15 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 448 | 16.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 489 | 16.88 | temperature | 15 | 14400 | > th | dose dependent | sin | 10 | NA |
| 495 | 16.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 536 | 16.89 | temperature | 15 | 14400 | > th | dose dependent | sin | 8 | NA |
| 633 | 16.90 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 662 | 16.91 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 749 | 16.92 | temperature | 15 | 14400 | > th | dose dependent | no | NA | NA |
| 750 | 16.92 | temperature | 30 | 14400 | < th | dose dependent | sin | 11 | NA |
| 772 | 16.92 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 831 | 16.92 | temperature | 15 | 14400 | > th | dose dependent | rect. | 8 | 21 |
| 843 | 16.92 | temperature | 15 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 844 | 16.92 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 859 | 16.93 | temperature | 30 | 14400 | < th | dose dependent | sin | 9 | NA |