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Os03g0711700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor TFIIS domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.97 (0.023) R2 : 0.00116
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0352 (0.0484) R2dN8 : 0.00149 R2N8 : 0.00116
σ : 0.433
deviance : 86.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.34 0.368 10.1 -0.802 0.462 0.438 0.23 -1.51 -0.256 17.4 19.4 2781 -- --
63.66 0.372 10 -0.693 0.461 0.894 0.379 -- -0.24 17.3 18.8 3255 -- --
61.46 0.365 10.1 -0.818 0.467 0.433 -- -1.54 -0.26 17.4 19.47 2775 -- --
63.83 0.372 10 -0.651 0.462 0.867 -- -- -0.22 17.5 18.73 3000 -- --
72.29 0.396 10 -0.768 -- 0.465 -- -1.33 -0.26 -- 19.4 2057 -- --
73.97 0.403 9.98 -0.23 0.439 -- 0.425 -- -0.0536 17.5 -- -- -- --
74.41 0.404 9.98 -0.232 0.442 -- -- -- -0.0517 17.5 -- -- -- --
74.35 0.402 10 -0.673 -- 0.864 -- -- -0.234 -- 18.79 3316 -- --
71.66 0.394 10 -- 0.451 0.493 -- -- -0.08 17 18.8 2748 -- --
84.57 0.43 9.97 -0.247 -- -- -- -- -0.0625 -- -- -- -- --
75.83 0.407 9.97 -- 0.446 -- -- -- -0.0259 17.5 -- -- -- --
81.34 0.42 9.98 -- -- 0.52 -- -- -0.102 -- 19.3 1659 -- --
86.17 0.433 9.97 -- -- -- -- -- -0.0352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.78 wind 1 43200 > th dose dependent rect. 1 2
2 59.18 wind 9 43200 < th dose dependent rect. 1 2
4 59.26 temperature 10 43200 > th dose independent rect. 10 5
5 59.48 wind 1 43200 > th dose dependent rect. 22 7
8 59.58 radiation 20 4320 > th dose dependent rect. 16 16
10 59.72 wind 9 43200 < th dose dependent rect. 22 7
12 59.81 wind 9 43200 < th dose dependent rect. 23 5
15 59.85 radiation 10 4320 > th dose dependent rect. 6 2
33 59.96 radiation 30 4320 > th dose independent rect. 16 16
51 60.04 radiation 30 4320 > th dose independent rect. 7 1
78 60.18 wind 9 43200 > th dose independent rect. 10 3
79 60.18 wind 3 43200 > th dose independent rect. 23 5
92 60.29 wind 1 14400 > th dose independent rect. 23 3
100 60.34 wind 7 43200 > th dose dependent rect. 10 3
107 60.38 wind 3 43200 > th dose dependent rect. 23 15
112 60.42 wind 9 43200 < th dose independent rect. 10 2
113 60.43 wind 7 43200 > th dose dependent rect. 21 17
116 60.47 wind 3 43200 > th dose dependent rect. 1 13
121 60.50 wind 7 43200 < th dose independent rect. 3 10
122 60.50 wind 7 43200 > th dose independent rect. 2 11
124 60.50 wind 7 43200 > th dose independent rect. 22 15
128 60.51 wind 7 43200 < th dose independent rect. 22 15
129 60.51 wind 9 43200 < th dose dependent rect. 10 1
141 60.56 wind 1 43200 > th dose dependent rect. 10 1
161 60.62 wind 3 43200 > th dose dependent sin 7 NA
165 60.63 wind 9 43200 < th dose independent rect. 9 4
173 60.64 wind 7 43200 > th dose dependent rect. 1 13
202 60.70 wind 3 43200 > th dose dependent rect. 1 6
203 60.71 wind 7 43200 < th dose independent sin 6 NA
212 60.72 wind 3 43200 < th dose independent rect. 22 6
234 60.75 wind 7 43200 > th dose independent sin 6 NA
284 60.84 radiation 30 4320 < th dose independent rect. 7 1
308 60.87 wind 7 43200 > th dose dependent sin 6 NA
332 60.91 wind 1 14400 < th dose independent rect. 23 3
359 60.94 radiation 30 4320 < th dose independent rect. 21 11
360 60.94 atmosphere 995 43200 < th dose independent rect. 18 20
386 60.98 atmosphere 995 43200 > th dose independent rect. 23 15
395 61.00 temperature 20 4320 < th dose independent rect. 17 6
396 61.00 atmosphere 995 43200 > th dose independent rect. 1 12
403 61.00 atmosphere 995 43200 < th dose dependent rect. 16 19
409 61.01 temperature 20 4320 > th dose independent rect. 16 7
437 61.04 atmosphere 995 43200 < th dose dependent rect. 10 20
441 61.05 temperature 20 4320 > th dose independent rect. 17 5
457 61.06 wind 9 43200 < th dose dependent rect. 22 14
462 61.07 atmosphere 995 43200 < th dose independent sin 6 NA
523 61.12 atmosphere 995 43200 < th dose independent rect. 22 16
542 61.14 humidity 90 43200 > th dose independent rect. 10 3
551 61.14 atmosphere 995 43200 < th dose dependent sin 8 NA
602 61.17 atmosphere 995 43200 < th dose dependent rect. 21 19
614 61.18 humidity 90 43200 > th dose dependent rect. 10 3
620 61.18 atmosphere 995 43200 < th dose dependent rect. 21 14
631 61.19 temperature 15 4320 > th dose dependent rect. 18 1
644 61.20 temperature 15 4320 > th dose dependent rect. 9 11
660 61.21 wind 5 43200 < th dose independent rect. 21 10
695 61.22 temperature 20 4320 > th dose dependent rect. 9 8
699 61.22 wind 9 43200 < th dose dependent rect. 1 12
718 61.23 atmosphere 995 43200 < th dose independent rect. 2 10
719 61.23 atmosphere 995 43200 < th dose independent rect. 1 12
737 61.24 atmosphere 995 43200 > th dose independent rect. 3 8
808 61.27 radiation 10 4320 > th dose independent rect. 6 1
810 61.27 atmosphere 995 43200 > th dose independent rect. 5 4
815 61.27 atmosphere 995 43200 < th dose dependent no NA NA
845 61.28 temperature 15 4320 > th dose dependent rect. 13 7
860 61.29 atmosphere 995 43200 > th dose independent rect. 4 6
884 61.30 atmosphere 995 43200 < th dose independent rect. 3 8
892 61.30 temperature 15 4320 > th dose dependent rect. 9 2
958 61.32 wind 9 43200 > th dose independent rect. 19 19
962 61.32 temperature 20 4320 > th dose dependent rect. 13 2