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Os03g0711600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0158) R2 : 0.682
β1 : 0.879 (0.058) R2dD : 0.166 R2D : 0.145
β2 : 1.11 (0.0413) R2dC : 0.505 R2C : 0.514
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.163 (0.0338) R2dN8 : 0.0219 R2N8 : -2.48e-05
σ : 0.298
deviance : 40.48
__
_____
C
peak time of C : 5.37
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.73 0.243 9.68 1.3 0.943 0.887 0.0857 -1.22 0.405 6.25 28.9 14 -- --
28.95 0.251 9.7 1.12 0.931 0.933 -0.0528 -- 0.358 6.33 28.55 14 -- --
26.75 0.241 9.68 1.3 0.942 0.889 -- -1.21 0.404 6.25 28.9 13 -- --
28.94 0.251 9.7 1.1 0.931 0.91 -- -- 0.355 6.29 28.62 14 -- --
57.03 0.352 9.67 1.57 -- 1.79 -- -1.93 0.506 -- 35.41 272 -- --
40.45 0.298 9.75 0.88 1.11 -- -0.11 -- 0.163 5.36 -- -- -- --
40.48 0.298 9.75 0.879 1.11 -- -- -- 0.163 5.37 -- -- -- --
59.65 0.36 9.71 1.27 -- 1.73 -- -- 0.424 -- 72.35 268 -- --
57.54 0.355 9.75 -- 1.04 0.457 -- -- 0.152 5.74 27.73 13 -- --
104.38 0.477 9.76 0.917 -- -- -- -- 0.191 -- -- -- -- --
60.87 0.365 9.77 -- 1.12 -- -- -- 0.0655 5.34 -- -- -- --
99.26 0.464 9.75 -- -- 1.3 -- -- 0.236 -- 61.15 267 -- --
126.56 0.525 9.78 -- -- -- -- -- 0.0891 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.02 temperature 30 90 < th dose dependent rect. 11 19
2 25.17 temperature 15 90 > th dose dependent rect. 6 21
3 25.36 temperature 15 90 > th dose dependent rect. 5 23
16 25.90 temperature 30 10 < th dose dependent rect. 10 20
23 26.07 temperature 30 270 < th dose dependent rect. 9 21
43 26.50 temperature 30 10 < th dose dependent rect. 1 23
44 26.50 temperature 30 90 < th dose dependent rect. 7 23
49 26.59 temperature 30 10 < th dose dependent rect. 8 23
54 26.65 temperature 30 10 < th dose dependent rect. 11 23
58 26.73 temperature 30 10 < th dose dependent rect. 13 23
61 26.79 temperature 30 10 < th dose dependent rect. 17 23
63 26.86 temperature 30 10 < th dose dependent no NA NA
75 26.96 temperature 10 720 > th dose dependent rect. 6 12
78 26.97 temperature 30 10 < th dose dependent rect. 15 23
90 27.07 temperature 30 10 < th dose dependent rect. 3 23
112 27.22 temperature 30 30 < th dose dependent rect. 21 23
120 27.29 temperature 30 720 < th dose dependent rect. 8 12
125 27.38 temperature 10 10 > th dose dependent no NA NA
130 27.39 temperature 30 30 < th dose dependent rect. 19 23
132 27.41 temperature 30 10 < th dose dependent rect. 23 23
147 27.58 temperature 15 90 > th dose dependent rect. 15 23
158 27.69 temperature 30 90 < th dose dependent rect. 13 17
175 27.82 temperature 30 90 < th dose dependent rect. 15 15
184 27.92 temperature 25 720 < th dose independent rect. 8 13
195 27.98 temperature 10 720 > th dose dependent rect. 11 7
198 27.99 temperature 30 720 < th dose dependent sin 22 NA
199 27.99 temperature 10 720 > th dose dependent rect. 9 9
202 28.02 temperature 15 720 > th dose dependent rect. 13 5
225 28.15 temperature 15 270 > th dose dependent rect. 13 23
240 28.26 temperature 20 720 > th dose dependent rect. 14 3
283 28.40 radiation 1 720 < th dose dependent rect. 7 22
354 28.72 temperature 20 10 > th dose dependent rect. 16 23
364 28.75 temperature 30 30 < th dose dependent rect. 17 13
369 28.75 radiation 1 720 < th dose dependent rect. 14 21
373 28.76 radiation 1 720 < th dose dependent rect. 3 16
391 28.80 temperature 10 720 > th dose dependent sin 23 NA
400 28.81 temperature 10 720 > th dose dependent rect. 22 20
428 28.89 radiation 1 720 < th dose independent rect. 7 22
470 29.01 temperature 25 720 < th dose independent sin 21 NA
477 29.02 radiation 1 720 < th dose dependent sin 13 NA
487 29.05 temperature 30 10 < th dose dependent sin 17 NA
524 29.11 radiation 1 720 < th dose dependent rect. 21 23
527 29.12 radiation 1 720 < th dose dependent no NA NA
589 29.23 radiation 1 720 < th dose dependent rect. 6 14
612 29.27 temperature 25 10 < th dose dependent rect. 5 23
626 29.30 radiation 1 720 < th dose dependent rect. 15 15
661 29.36 temperature 20 10 > th dose dependent rect. 23 23
701 29.43 temperature 15 90 > th dose dependent rect. 23 23
714 29.45 radiation 1 720 < th dose dependent rect. 1 23
718 29.46 temperature 20 90 > th dose dependent rect. 8 23
742 29.51 radiation 1 720 < th dose independent rect. 7 14
748 29.51 radiation 1 720 < th dose dependent rect. 23 23
750 29.52 temperature 25 90 < th dose independent rect. 11 19
778 29.57 temperature 15 90 > th dose dependent rect. 20 23
786 29.58 temperature 20 10 > th dose dependent rect. 9 23
820 29.64 radiation 1 720 > th dose independent rect. 6 13
846 29.66 radiation 1 720 < th dose dependent sin 23 NA
893 29.74 temperature 10 10 > th dose dependent sin 18 NA
899 29.74 radiation 1 720 < th dose dependent rect. 3 23