Os03g0711300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0711300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.72 | 0.161 | 9.42 | 0.107 | 0.472 | 0.271 | -0.4 | 0.418 | 0.0811 | 4.05 | 71.09 | 1628 | -- | -- |
| 11.99 | 0.161 | 9.42 | 0.159 | 0.446 | 0.329 | -0.387 | -- | 0.0987 | 3.84 | 71.25 | 1752 | -- | -- |
| 12.16 | 0.162 | 9.42 | 0.109 | 0.476 | 0.273 | -- | 0.357 | 0.0804 | 4.08 | 71 | 1600 | -- | -- |
| 12.29 | 0.163 | 9.41 | 0.166 | 0.443 | 0.32 | -- | -- | 0.101 | 4.04 | 71.47 | 1703 | -- | -- |
| 19.04 | 0.204 | 9.42 | 0.171 | -- | 0.307 | -- | -0.13 | 0.0854 | -- | 75 | 1824 | -- | -- |
| 14.55 | 0.179 | 9.42 | 0.114 | 0.511 | -- | -0.408 | -- | 0.0589 | 4.03 | -- | -- | -- | -- |
| 15.02 | 0.181 | 9.42 | 0.119 | 0.509 | -- | -- | -- | 0.0612 | 4.09 | -- | -- | -- | -- |
| 19.15 | 0.205 | 9.42 | 0.166 | -- | 0.306 | -- | -- | 0.0837 | -- | 74.99 | 1827 | -- | -- |
| 13.04 | 0.168 | 9.41 | -- | 0.444 | 0.297 | -- | -- | 0.0907 | 4.01 | 72 | 1711 | -- | -- |
| 29.1 | 0.252 | 9.42 | 0.14 | -- | -- | -- | -- | 0.0747 | -- | -- | -- | -- | -- |
| 15.4 | 0.184 | 9.43 | -- | 0.511 | -- | -- | -- | 0.0479 | 4.08 | -- | -- | -- | -- |
| 19.87 | 0.208 | 9.43 | -- | -- | 0.302 | -- | -- | 0.0652 | -- | 74.99 | 1827 | -- | -- |
| 29.62 | 0.254 | 9.43 | -- | -- | -- | -- | -- | 0.0592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 2 | 11.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 8 | 11.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 12 | 11.43 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 15 | 11.44 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 21 | NA |
| 21 | 11.44 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 31 | 11.45 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 73 | 11.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 139 | 11.51 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 238 | 11.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 295 | 11.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 7 |
| 334 | 11.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 335 | 11.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 343 | 11.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 359 | 11.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 373 | 11.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 486 | 11.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 18 |
| 487 | 11.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 498 | 11.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 21 |
| 533 | 11.64 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 541 | 11.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 562 | 11.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 600 | 11.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 652 | 11.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 785 | 11.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 806 | 11.73 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 807 | 11.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 839 | 11.73 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 840 | 11.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 895 | 11.74 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 897 | 11.74 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 912 | 11.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 956 | 11.75 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 968 | 11.76 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 970 | 11.76 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 971 | 11.76 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 974 | 11.76 | humidity | 70.0 | 720 | > th | dose independent | rect. | 3 | 18 |
| 977 | 11.76 | humidity | 70.0 | 720 | > th | dose independent | rect. | 3 | 20 |
| 981 | 11.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 984 | 11.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 985 | 11.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 987 | 11.76 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |