Os03g0710600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0710600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.03 | 0.301 | 13.5 | -0.403 | 0.476 | -0.439 | 0.175 | 0.338 | -0.611 | 13.7 | 80.19 | 29 | -- | -- |
| 41.27 | 0.299 | 13.5 | -0.38 | 0.467 | -0.445 | -0.0408 | -- | -0.609 | 13.6 | 80.38 | 36 | -- | -- |
| 41.1 | 0.299 | 13.5 | -0.391 | 0.472 | -0.448 | -- | 0.24 | -0.611 | 13.6 | 80.42 | 34 | -- | -- |
| 41.28 | 0.299 | 13.5 | -0.381 | 0.47 | -0.439 | -- | -- | -0.608 | 13.6 | 80.37 | 36 | -- | -- |
| 46.33 | 0.317 | 13.5 | -0.441 | -- | -0.78 | -- | 0.267 | -0.633 | -- | 72.79 | 7 | -- | -- |
| 46.66 | 0.32 | 13.5 | -0.422 | 0.773 | -- | 0.17 | -- | -0.541 | 14.2 | -- | -- | -- | -- |
| 46.77 | 0.32 | 13.5 | -0.417 | 0.773 | -- | -- | -- | -0.541 | 14.1 | -- | -- | -- | -- |
| 46.48 | 0.318 | 13.5 | -0.41 | -- | -0.754 | -- | -- | -0.631 | -- | 72.73 | 6 | -- | -- |
| 45.02 | 0.313 | 13.5 | -- | 0.467 | -0.468 | -- | -- | -0.575 | 13.6 | 81.33 | 36 | -- | -- |
| 82.52 | 0.424 | 13.5 | -0.45 | -- | -- | -- | -- | -0.559 | -- | -- | -- | -- | -- |
| 51.36 | 0.335 | 13.5 | -- | 0.781 | -- | -- | -- | -0.494 | 14.2 | -- | -- | -- | -- |
| 50.8 | 0.333 | 13.5 | -- | -- | -0.764 | -- | -- | -0.592 | -- | 74.47 | 11 | -- | -- |
| 87.86 | 0.437 | 13.5 | -- | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.76 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 15 |
| 2 | 36.02 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 15 |
| 6 | 36.63 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 11 |
| 11 | 36.99 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 10 |
| 24 | 37.39 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 19 |
| 25 | 37.40 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 7 |
| 31 | 37.66 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 6 |
| 39 | 37.73 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 7 |
| 40 | 37.73 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 9 |
| 49 | 37.84 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 75 | 38.35 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 76 | 38.35 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 84 | 38.39 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 85 | 38.40 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 12 |
| 121 | 38.59 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 20 |
| 169 | 38.78 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 12 |
| 176 | 38.81 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 14 |
| 232 | 39.05 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 21 |
| 243 | 39.10 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 24 | 23 |
| 310 | 39.34 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 7 |
| 324 | 39.39 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 18 |
| 355 | 39.49 | humidity | 60 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 356 | 39.50 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 389 | 39.65 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 410 | 39.68 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 16 |
| 429 | 39.75 | humidity | 80 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 433 | 39.76 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 15 | 15 |
| 434 | 39.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 6 |
| 438 | 39.79 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 446 | 39.81 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 5 |
| 454 | 39.82 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 15 |
| 462 | 39.86 | humidity | 70 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 491 | 39.92 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 12 |
| 495 | 39.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 3 |
| 499 | 39.94 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 511 | 39.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 10 |
| 518 | 39.96 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 18 |
| 521 | 39.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 547 | 40.02 | wind | 3 | 30 | < th | dose dependent | rect. | 24 | 7 |
| 564 | 40.06 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 569 | 40.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 582 | 40.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 591 | 40.10 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 16 |
| 605 | 40.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 635 | 40.17 | humidity | 80 | 30 | > th | dose dependent | sin | 6 | NA |
| 650 | 40.19 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 656 | 40.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 715 | 40.29 | humidity | 70 | 10 | > th | dose dependent | rect. | 14 | 17 |
| 732 | 40.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 6 |
| 760 | 40.34 | humidity | 90 | 30 | < th | dose independent | rect. | 23 | 12 |
| 772 | 40.35 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 11 | 23 |
| 780 | 40.36 | humidity | 90 | 30 | > th | dose independent | rect. | 1 | 5 |
| 786 | 40.36 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 9 | 21 |
| 811 | 40.39 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 23 |
| 885 | 40.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 919 | 40.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 928 | 40.52 | humidity | 80 | 30 | > th | dose dependent | rect. | 10 | 21 |
| 933 | 40.53 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 940 | 40.54 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 23 |
| 966 | 40.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 976 | 40.57 | wind | 1 | 30 | > th | dose independent | rect. | 21 | 14 |
| 982 | 40.57 | humidity | 80 | 30 | > th | dose dependent | rect. | 8 | 23 |