FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0710500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Luminal binding protein 2 precursor (BiP2) (Heat shock protein 70 homolog 2) (B70) (B-70).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.63 (0.0395) R2 : 0.163
β1 : 0.835 (0.151) R2dD : 0.0651 R2D : 0.0245
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.38 (0.185) R2dE : 0.123 R2E : 0.0875
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.113 (0.0881) R2dN8 : 0.00453 R2N8 : 0.02
σ : 0.73
deviance : 245.78
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 10.51
memory length : 784
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.16 0.724 4.63 0.769 0.657 -1.56 -0.167 -0.37 -0.116 13.7 9.849 257 -- --
237.24 0.717 4.62 0.827 0.656 -1.57 -0.227 -- -0.101 13.7 10.39 256 -- --
237.25 0.717 4.63 0.743 0.658 -1.56 -- -0.509 -0.123 13.6 10.4 252 -- --
237.44 0.718 4.62 0.82 0.657 -1.57 -- -- -0.102 13.6 10.32 255 -- --
245.7 0.73 4.64 0.777 -- -1.38 -- -0.329 -0.13 -- 5.172 784 -- --
263.1 0.76 4.67 0.479 0.458 -- 0.116 -- -0.325 10.7 -- -- -- --
263.14 0.76 4.67 0.484 0.457 -- -- -- -0.324 10.8 -- -- -- --
245.78 0.73 4.63 0.835 -- -1.38 -- -- -0.113 -- 10.51 784 -- --
253.33 0.741 4.65 -- 0.567 -1.17 -- -- -0.239 13.1 -3.921 256 -- --
276.05 0.776 4.68 0.475 -- -- -- -- -0.327 -- -- -- -- --
269.33 0.768 4.68 -- 0.453 -- -- -- -0.378 10.7 -- -- -- --
262.24 0.754 4.66 -- -- -1.06 -- -- -0.247 -- 10.89 748 -- --
282 0.784 4.69 -- -- -- -- -- -0.379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.21 temperature 30 30 < th dose dependent rect. 3 23
2 235.01 temperature 20 720 > th dose dependent rect. 23 4
5 235.62 temperature 15 90 > th dose dependent rect. 1 23
8 236.02 temperature 20 720 > th dose dependent rect. 17 16
9 236.08 temperature 20 720 > th dose dependent sin 10 NA
13 236.30 temperature 20 720 > th dose dependent rect. 19 14
14 236.30 temperature 10 720 > th dose dependent rect. 17 16
15 236.34 temperature 20 720 > th dose dependent rect. 21 12
18 236.51 temperature 30 30 < th dose dependent rect. 14 23
20 236.55 temperature 10 720 > th dose dependent rect. 22 7
24 236.62 temperature 10 270 > th dose dependent rect. 4 23
33 236.73 temperature 15 90 > th dose dependent rect. 21 23
35 236.76 temperature 10 720 > th dose dependent rect. 15 18
47 236.96 temperature 15 30 > th dose dependent rect. 23 23
50 237.07 temperature 20 270 > th dose dependent rect. 23 10
56 237.19 temperature 10 270 > th dose dependent no NA NA
60 237.22 temperature 10 720 > th dose dependent sin 11 NA
61 237.22 temperature 30 720 < th dose dependent sin 10 NA
64 237.24 temperature 30 270 < th dose dependent rect. 21 22
71 237.36 temperature 15 270 > th dose dependent rect. 12 23
73 237.39 temperature 15 10 > th dose dependent rect. 2 23
87 237.50 temperature 20 30 > th dose dependent rect. 2 18
88 237.51 temperature 20 1440 > th dose dependent rect. 24 1
98 237.65 temperature 15 270 > th dose dependent rect. 15 23
104 237.67 temperature 30 720 < th dose dependent rect. 19 15
105 237.68 temperature 10 720 > th dose dependent rect. 19 15
116 237.75 temperature 30 30 < th dose dependent rect. 7 23
138 237.96 temperature 30 270 < th dose dependent rect. 7 23
152 238.05 temperature 30 270 < th dose dependent rect. 24 23
161 238.11 temperature 25 4320 > th dose dependent rect. 23 11
162 238.12 temperature 10 720 > th dose dependent rect. 21 13
168 238.13 temperature 30 30 < th dose dependent rect. 9 23
182 238.17 temperature 15 10 > th dose dependent rect. 17 23
183 238.18 temperature 20 30 > th dose dependent rect. 23 21
259 238.63 temperature 30 90 < th dose dependent no NA NA
268 238.69 temperature 15 270 > th dose dependent rect. 17 23
281 238.76 temperature 30 30 < th dose dependent rect. 11 23
293 238.81 atmosphere 1005 90 > th dose dependent rect. 11 10
296 238.82 temperature 10 720 > th dose dependent rect. 12 21
340 239.03 temperature 25 720 < th dose dependent rect. 23 6
367 239.12 temperature 15 10 > th dose dependent rect. 13 23
392 239.25 temperature 25 720 < th dose dependent rect. 24 3
434 239.39 temperature 25 4320 > th dose dependent rect. 8 2
530 239.72 atmosphere 1005 10 > th dose dependent rect. 11 12
592 239.86 temperature 25 720 < th dose dependent rect. 11 21
607 239.91 temperature 15 270 > th dose dependent rect. 8 23
696 240.12 temperature 10 720 > th dose dependent rect. 21 17
762 240.28 atmosphere 1005 10 > th dose dependent rect. 11 10
864 240.50 temperature 30 30 < th dose dependent rect. 5 23
966 240.71 temperature 30 10 < th dose dependent rect. 1 23