Os03g0709500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0709500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.83 | 0.563 | 3.77 | -2.04 | 0.27 | 1.25 | 0.00335 | -5.8 | -0.111 | 6.17 | 26.53 | 1500 | -- | -- |
| 156 | 0.582 | 3.58 | -0.642 | 0.268 | 0.518 | 0.132 | -- | 0.179 | 6.89 | 27.96 | 6088 | -- | -- |
| 143.74 | 0.558 | 3.76 | -2.01 | 0.282 | 1.28 | -- | -5.86 | -0.0928 | 6.09 | 26.6 | 1533 | -- | -- |
| 152.54 | 0.575 | 3.62 | -0.569 | 0.318 | 0.61 | -- | -- | 0.123 | 5.44 | 29.64 | 7485 | -- | -- |
| 147.43 | 0.566 | 3.75 | -1.94 | -- | 1.19 | -- | -5.31 | -0.071 | -- | 26.6 | 1470 | -- | -- |
| 168.98 | 0.609 | 3.58 | -0.383 | 0.249 | -- | 0.122 | -- | 0.215 | 5.75 | -- | -- | -- | -- |
| 169.02 | 0.609 | 3.58 | -0.382 | 0.25 | -- | -- | -- | 0.214 | 5.83 | -- | -- | -- | -- |
| 153.33 | 0.577 | 3.62 | -0.485 | -- | 0.537 | -- | -- | 0.0862 | -- | 32.7 | 7260 | -- | -- |
| 158 | 0.585 | 3.6 | -- | 0.244 | 0.53 | -- | -- | 0.159 | 6.63 | 32.8 | 7444 | -- | -- |
| 172.26 | 0.613 | 3.59 | -0.375 | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
| 172.87 | 0.615 | 3.57 | -- | 0.244 | -- | -- | -- | 0.257 | 5.91 | -- | -- | -- | -- |
| 160.31 | 0.59 | 3.59 | -- | -- | 0.512 | -- | -- | 0.198 | -- | 32.92 | 7280 | -- | -- |
| 175.97 | 0.619 | 3.58 | -- | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 48 | 144.54 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 251 | 146.11 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 262 | 146.19 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 297 | 146.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 333 | 147.16 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 335 | 147.20 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 341 | 147.38 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 368 | 148.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 371 | 148.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 372 | 148.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 375 | 148.34 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 377 | 148.34 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 399 | 148.76 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 416 | 148.82 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 417 | 148.84 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 418 | 148.84 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 435 | 148.85 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 441 | 148.87 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 466 | 148.93 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 563 | 149.57 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 605 | 149.67 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 674 | 149.86 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 677 | 149.89 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 707 | 149.94 | humidity | 50 | 1440 | < th | dose independent | sin | 11 | NA |
| 747 | 150.16 | humidity | 50 | 1440 | > th | dose independent | sin | 11 | NA |
| 832 | 150.69 | humidity | 50 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 850 | 150.72 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 870 | 150.78 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 878 | 150.87 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 879 | 150.88 | humidity | 50 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 882 | 150.92 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 887 | 150.94 | humidity | 50 | 1440 | > th | dose independent | rect. | 1 | 16 |
| 890 | 150.95 | humidity | 50 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 928 | 151.07 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 929 | 151.07 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 932 | 151.09 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 971 | 151.23 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 989 | 151.32 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 3 |