Os03g0708700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF593 family protein.
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Os03g0708700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF593 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.74 | 0.369 | 8.68 | 0.869 | 0.902 | -1.04 | 1.77 | 0.135 | 0.372 | 6.64 | 0.17 | 63 | -- | -- |
| 61.81 | 0.366 | 8.68 | 0.874 | 0.914 | -1.06 | 1.76 | -- | 0.377 | 6.54 | 0.18 | 64 | -- | -- |
| 69.25 | 0.388 | 8.7 | 0.899 | 0.912 | -1.03 | -- | -0.1 | 0.357 | 6.68 | 0.1779 | 62 | -- | -- |
| 69.27 | 0.388 | 8.69 | 0.892 | 0.905 | -1.02 | -- | -- | 0.357 | 6.75 | 0.1797 | 61 | -- | -- |
| 103.67 | 0.477 | 8.69 | 0.918 | -- | -1.1 | -- | -0.157 | 0.429 | -- | 0.1779 | 62 | -- | -- |
| 84.85 | 0.432 | 8.65 | 0.953 | 1.6 | -- | 0.71 | -- | 0.417 | 9.85 | -- | -- | -- | -- |
| 86.75 | 0.436 | 8.65 | 0.981 | 1.6 | -- | -- | -- | 0.419 | 9.91 | -- | -- | -- | -- |
| 103.83 | 0.477 | 8.69 | 0.915 | -- | -1.1 | -- | -- | 0.429 | -- | 0.2355 | 61 | -- | -- |
| 90.53 | 0.443 | 8.71 | -- | 0.931 | -1.07 | -- | -- | 0.285 | 6.42 | 0.1757 | 60 | -- | -- |
| 239.76 | 0.724 | 8.69 | 0.963 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 112.12 | 0.495 | 8.67 | -- | 1.59 | -- | -- | -- | 0.31 | 9.86 | -- | -- | -- | -- |
| 125.91 | 0.524 | 8.71 | -- | -- | -1.11 | -- | -- | 0.327 | -- | 0.2355 | 61 | -- | -- |
| 264.23 | 0.759 | 8.72 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.54 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 3 | 59.35 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 4 | 59.39 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 6 | 59.55 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 7 | 59.69 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 8 | 59.78 | radiation | 1.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 11 | 59.90 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 21 | 60.27 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 23 | 60.32 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 25 | 60.46 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 33 | 61.03 | radiation | 1.0 | 30 | < th | dose independent | sin | 9 | NA |
| 37 | 61.26 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 40 | 61.30 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 61 | 61.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 74 | 61.87 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 78 | 61.96 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 83 | 62.08 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 16 | 13 |
| 86 | 62.17 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 87 | 62.18 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 89 | 62.28 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 90 | 62.32 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 100 | 62.43 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 3 |
| 101 | 62.43 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 106 | 62.46 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 108 | 62.46 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 109 | 62.46 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 111 | 62.46 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 112 | 62.46 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 115 | 62.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 119 | 62.52 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 122 | 62.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 123 | 62.55 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 20 |
| 136 | 62.80 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 138 | 62.83 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 154 | 62.89 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 156 | 62.90 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 159 | 62.91 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 162 | 62.94 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 8 |
| 170 | 62.99 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 180 | 63.08 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 20 |
| 183 | 63.12 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 197 | 63.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 212 | 63.30 | radiation | 10.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 223 | 63.38 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 231 | 63.40 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 236 | 63.43 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 253 | 63.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 20 |
| 254 | 63.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 255 | 63.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 1 |
| 256 | 63.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 259 | 63.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 261 | 63.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 262 | 63.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 265 | 63.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 280 | 63.62 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 363 | 63.95 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 391 | 64.11 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 397 | 64.14 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 399 | 64.16 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 404 | 64.20 | radiation | 1.0 | 10 | > th | dose independent | sin | 8 | NA |
| 407 | 64.21 | wind | 5.0 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 423 | 64.27 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 462 | 64.35 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 463 | 64.35 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 470 | 64.37 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 496 | 64.47 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 497 | 64.48 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 500 | 64.50 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 502 | 64.50 | wind | 9.0 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 531 | 64.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 557 | 64.61 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 576 | 64.69 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 577 | 64.70 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 578 | 64.70 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 615 | 64.83 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 617 | 64.83 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 640 | 64.88 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 645 | 64.89 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 659 | 64.94 | radiation | 1.0 | 10 | > th | dose independent | sin | 3 | NA |
| 710 | 65.10 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 5 |
| 757 | 65.21 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 5 |
| 762 | 65.24 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 770 | 65.27 | wind | 3.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 784 | 65.29 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 793 | 65.31 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 7 |
| 795 | 65.32 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 10 |
| 797 | 65.32 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 800 | 65.34 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 826 | 65.41 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 831 | 65.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 834 | 65.44 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 835 | 65.44 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 837 | 65.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 840 | 65.44 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 889 | 65.51 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 892 | 65.53 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 4 |
| 893 | 65.53 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 897 | 65.55 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 900 | 65.57 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 20 |
| 903 | 65.59 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 15 |
| 949 | 65.67 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 957 | 65.69 | wind | 9.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 958 | 65.69 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 960 | 65.69 | temperature | 30.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 961 | 65.69 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 964 | 65.69 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 965 | 65.69 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 973 | 65.69 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 974 | 65.69 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 976 | 65.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 977 | 65.69 | radiation | 20.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 980 | 65.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 981 | 65.69 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 984 | 65.69 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 20 |