Os03g0708500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os03g0708500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.02 | 0.382 | 14.2 | -0.454 | 1.33 | -2.45 | -0.0275 | 1.47 | -0.653 | 22.1 | 14.47 | 245 | 4.12 | 6.23 |
| 65.65 | 0.377 | 14.2 | -0.529 | 1.5 | -2.19 | -0.495 | -- | -0.657 | 22.2 | 16 | 171 | 4.3 | 6.5 |
| 64.65 | 0.374 | 14.2 | -0.479 | 1.31 | -2.32 | -- | 1.6 | -0.641 | 22.2 | 13.8 | 204 | 4.08 | 6.7 |
| 66.45 | 0.38 | 14.2 | -0.499 | 1.36 | -2.28 | -- | -- | -0.624 | 22.3 | 14.85 | 163 | 4.17 | 6.78 |
| 84.84 | 0.429 | 14.1 | -0.0826 | -- | -3.32 | -- | 2.49 | -0.515 | -- | 10.89 | 220 | 3.7 | 7.5 |
| 127.84 | 0.53 | 14.3 | -0.669 | 2.73 | -- | -0.327 | -- | -0.818 | 21.8 | -- | -- | -- | -- |
| 128.25 | 0.53 | 14.3 | -0.656 | 2.73 | -- | -- | -- | -0.817 | 21.8 | -- | -- | -- | -- |
| 73.09 | 0.398 | 14.2 | -0.543 | -- | -3.23 | -- | -- | -0.697 | -- | 5.277 | 272 | 3.3 | 7.6 |
| 73.25 | 0.399 | 14.2 | -- | 1.37 | -2.27 | -- | -- | -0.587 | 22.2 | 15.29 | 163 | 4.17 | 6.82 |
| 574.95 | 1.12 | 14.2 | -0.627 | -- | -- | -- | -- | -0.818 | -- | -- | -- | -- | -- |
| 139.6 | 0.553 | 14.3 | -- | 2.73 | -- | -- | -- | -0.744 | 21.8 | -- | -- | -- | -- |
| 78.98 | 0.414 | 14.2 | -- | -- | -3.26 | -- | -- | -0.609 | -- | 6.356 | 267 | 3.15 | 7.82 |
| 585.33 | 1.13 | 14.2 | -- | -- | -- | -- | -- | -0.748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 4 | 67.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 6 |
| 37 | 77.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 78 | 83.67 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 85 | 84.08 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 86 | 84.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 8 |
| 87 | 84.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 91 | 84.46 | radiation | 1.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 93 | 84.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 16 |
| 94 | 84.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 102 | 84.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 103 | 84.74 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 104 | 84.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 109 | 84.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 116 | 85.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 129 | 86.11 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 143 | 86.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 144 | 86.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 145 | 86.64 | radiation | 1.0 | 270 | > th | dose independent | sin | 10 | NA |
| 147 | 86.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 150 | 86.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 152 | 86.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 155 | 86.79 | radiation | 1.0 | 270 | < th | dose independent | sin | 10 | NA |
| 156 | 86.81 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 162 | 86.90 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 182 | 87.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 183 | 87.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 187 | 87.40 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 188 | 87.47 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 197 | 87.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 16 |
| 198 | 87.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 203 | 88.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 207 | 88.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 223 | 88.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 229 | 88.44 | radiation | 30.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 235 | 88.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 236 | 88.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 243 | 88.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 244 | 88.63 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 8 |
| 245 | 88.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 260 | 88.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 266 | 88.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 8 |
| 267 | 88.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 270 | 89.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 8 |
| 274 | 89.19 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 288 | 89.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 8 |
| 290 | 89.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 296 | 89.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 299 | 89.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 17 |
| 303 | 89.95 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 15 |
| 312 | 90.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 315 | 90.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 323 | 90.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 325 | 90.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 16 |
| 326 | 90.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 327 | 90.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 328 | 90.45 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 329 | 90.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 332 | 90.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 333 | 90.45 | radiation | 20.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 336 | 90.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 16 |
| 340 | 90.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 341 | 90.52 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 362 | 90.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 18 |
| 366 | 90.87 | humidity | 70.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 389 | 91.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 390 | 91.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 391 | 91.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 18 |
| 395 | 91.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 398 | 91.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 8 |
| 399 | 91.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 400 | 91.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 6 |
| 402 | 91.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 6 |
| 405 | 91.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 18 |
| 410 | 91.23 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 422 | 91.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 462 | 91.58 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 18 |
| 484 | 91.82 | temperature | 25.0 | 10 | > th | dose dependent | sin | 8 | NA |
| 494 | 91.92 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 499 | 91.99 | radiation | 30.0 | 270 | < th | dose independent | rect. | 5 | 4 |
| 512 | 92.22 | radiation | 40.0 | 270 | < th | dose independent | rect. | 5 | 17 |
| 519 | 92.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 16 |
| 520 | 92.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 527 | 92.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 544 | 92.56 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 545 | 92.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 16 |
| 549 | 92.60 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 551 | 92.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 18 |
| 553 | 92.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 569 | 92.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 570 | 92.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 574 | 92.87 | humidity | 50.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 575 | 92.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 17 |
| 579 | 92.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 618 | 93.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 636 | 93.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 647 | 93.28 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 18 |
| 657 | 93.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 4 |
| 658 | 93.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 4 |
| 660 | 93.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 661 | 93.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 662 | 93.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 665 | 93.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 689 | 93.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 20 |
| 700 | 93.71 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 715 | 93.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 720 | 93.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 753 | 94.26 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 768 | 94.37 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 806 | 94.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 840 | 94.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 859 | 95.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 865 | 95.05 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 912 | 95.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 20 |
| 916 | 95.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 967 | 95.44 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 997 | 95.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 17 |