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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0705700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.0327) R2 : 0.161
β1 : 1.02 (0.12) R2dD : 0.137 R2D : 0.148
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.16 (0.0698) R2dN8 : 0.0129 R2N8 : 0.024
σ : 0.614
deviance : 172.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.82 0.59 4.89 0.816 0.245 -2.2 -0.518 -8.9 -0.127 15.3 7.1 719 -- --
164.88 0.603 4.96 1.1 0.243 0.492 -0.12 -- -0.138 13.9 7.1 719 -- --
158.63 0.587 4.89 0.812 0.243 -2.16 -- -8.82 -0.128 15.2 7.197 690 -- --
164.41 0.597 4.96 1.1 0.264 0.803 -- -- -0.138 13.5 10.2 129 -- --
162 0.593 4.89 0.788 -- -2.21 -- -8.97 -0.129 -- 7.188 694 -- --
167.22 0.606 4.96 1.04 0.289 -- -0.291 -- -0.151 14.4 -- -- -- --
167.5 0.606 4.96 1.03 0.287 -- -- -- -0.153 14.1 -- -- -- --
168.03 0.606 4.97 1.09 -- 0.394 -- -- -0.161 -- 5.984 1247 -- --
195.27 0.651 4.98 -- 0.258 0.203 -- -- -0.256 14.1 10.2 245 -- --
172.44 0.614 4.97 1.02 -- -- -- -- -0.16 -- -- -- -- --
195.3 0.654 4.99 -- 0.268 -- -- -- -0.267 14.1 -- -- -- --
183.98 0.632 4.99 -- -- -0.877 -- -- -0.28 -- 6.7 11197 -- --
199.62 0.659 4.99 -- -- -- -- -- -0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.81 atmosphere 995.0 10 > th dose dependent rect. 24 7
2 147.85 atmosphere 1015.0 1440 < th dose independent rect. 1 7
3 147.87 atmosphere 1000.0 10 > th dose independent rect. 24 7
6 148.27 atmosphere 1000.0 30 > th dose dependent rect. 24 9
8 148.44 atmosphere 1015.0 1440 < th dose independent rect. 1 5
13 149.09 temperature 15.0 90 > th dose dependent rect. 22 1
14 149.54 atmosphere 1000.0 30 > th dose independent rect. 24 9
16 149.80 temperature 20.0 90 > th dose independent rect. 22 1
19 149.87 temperature 20.0 270 > th dose independent rect. 5 18
21 149.98 humidity 90.0 90 < th dose independent rect. 22 1
22 150.07 atmosphere 1000.0 270 > th dose independent rect. 23 6
25 150.53 atmosphere 995.0 270 > th dose dependent rect. 23 6
26 150.54 atmosphere 1015.0 1440 < th dose independent rect. 1 9
28 150.83 temperature 20.0 10 > th dose dependent rect. 22 2
32 150.89 atmosphere 995.0 10 > th dose dependent rect. 24 18
40 151.25 atmosphere 1010.0 10 < th dose independent rect. 5 19
41 151.28 radiation 20.0 10 < th dose dependent rect. 24 7
52 151.44 radiation 20.0 4320 < th dose independent rect. 1 5
53 151.45 temperature 10.0 10 > th dose dependent rect. 7 17
55 151.57 temperature 20.0 10 > th dose independent rect. 7 17
58 151.59 temperature 15.0 90 > th dose independent rect. 23 23
59 151.61 temperature 10.0 30 > th dose dependent rect. 5 19
61 151.66 wind 5.0 90 < th dose independent rect. 22 1
66 151.78 temperature 10.0 30 > th dose dependent rect. 18 6
68 151.79 temperature 10.0 1440 > th dose independent rect. 1 5
71 151.79 temperature 30.0 1440 < th dose independent rect. 1 5
75 151.79 humidity 50.0 1440 > th dose independent rect. 1 5
84 151.79 atmosphere 995.0 1440 > th dose independent rect. 1 5
94 151.79 temperature 10.0 1440 > th dose independent rect. 6 19
99 151.83 precipitation 0.1 10 < th dose independent rect. 7 17
100 151.83 precipitation 0.1 10 < th dose dependent rect. 7 17
102 151.88 wind 9.0 1440 < th dose independent rect. 1 5
106 151.95 radiation 10.0 10 < th dose independent rect. 24 7
110 151.99 radiation 40.0 1440 < th dose independent rect. 1 7
112 152.04 radiation 30.0 10 < th dose dependent rect. 24 9
126 152.26 precipitation 0.1 90 < th dose independent rect. 22 1
127 152.26 precipitation 0.1 90 < th dose dependent rect. 22 1
137 152.43 wind 9.0 1440 < th dose independent rect. 1 9
141 152.46 wind 9.0 1440 < th dose independent rect. 1 7
147 152.53 humidity 80.0 90 > th dose independent rect. 22 1
149 152.54 temperature 30.0 90 < th dose independent rect. 22 1
150 152.54 humidity 50.0 90 > th dose independent rect. 22 1
153 152.54 atmosphere 995.0 90 > th dose independent rect. 22 1
154 152.54 radiation 1.0 90 < th dose independent rect. 22 1
161 152.54 radiation 1.0 90 < th dose dependent rect. 22 1
178 152.65 temperature 20.0 30 > th dose independent rect. 18 6
179 152.67 wind 9.0 90 < th dose independent rect. 23 23
184 152.68 wind 7.0 10 < th dose independent rect. 24 7
185 152.69 wind 9.0 90 < th dose dependent rect. 22 1
188 152.74 atmosphere 1015.0 90 < th dose independent rect. 22 1
189 152.75 wind 9.0 10 < th dose independent rect. 7 17
193 152.78 temperature 10.0 10 > th dose independent rect. 24 7
194 152.78 temperature 30.0 10 < th dose independent rect. 24 7
195 152.78 humidity 50.0 10 > th dose independent rect. 24 7
211 152.85 atmosphere 1015.0 10 < th dose independent rect. 24 7
212 152.88 precipitation 0.1 30 < th dose independent rect. 24 7
214 152.88 precipitation 0.1 30 < th dose dependent rect. 24 7
232 152.95 humidity 60.0 90 > th dose independent rect. 5 19
234 152.96 atmosphere 1000.0 10 > th dose independent rect. 24 18
241 153.01 temperature 10.0 1440 > th dose independent rect. 1 7
244 153.01 temperature 30.0 1440 < th dose independent rect. 1 7
248 153.01 humidity 50.0 1440 > th dose independent rect. 1 7
253 153.01 atmosphere 995.0 1440 > th dose independent rect. 1 7
254 153.01 temperature 10.0 1440 > th dose independent rect. 8 17
257 153.02 wind 1.0 90 > th dose independent rect. 22 1
259 153.03 wind 1.0 270 > th dose independent rect. 23 6
271 153.21 temperature 15.0 270 > th dose independent rect. 2 22
274 153.29 atmosphere 1000.0 30 > th dose independent rect. 23 23
285 153.39 radiation 20.0 10 < th dose independent rect. 24 9
294 153.45 radiation 10.0 10 < th dose dependent rect. 24 17
295 153.46 wind 5.0 30 < th dose independent rect. 18 6
301 153.49 wind 9.0 30 < th dose dependent rect. 7 17
303 153.52 atmosphere 995.0 90 > th dose dependent rect. 22 1
307 153.53 wind 9.0 30 < th dose dependent rect. 24 7
313 153.58 radiation 1.0 1440 < th dose dependent rect. 19 6
315 153.59 humidity 50.0 10 > th dose independent rect. 7 17
321 153.65 temperature 20.0 270 > th dose independent rect. 17 6
328 153.68 humidity 70.0 10 > th dose independent rect. 18 6
346 153.80 precipitation 0.1 10 < th dose independent rect. 18 6
349 153.80 precipitation 0.1 10 < th dose dependent rect. 18 6
355 153.83 humidity 50.0 90 > th dose dependent rect. 22 1
366 153.91 temperature 25.0 10 > th dose independent rect. 22 2
368 153.91 humidity 60.0 90 > th dose independent rect. 5 8
374 153.93 temperature 30.0 30 < th dose independent rect. 18 6
379 153.98 radiation 30.0 14400 < th dose dependent rect. 19 6
382 153.98 radiation 1.0 30 < th dose dependent rect. 5 19
401 154.14 precipitation 0.1 90 < th dose independent rect. 24 5
402 154.14 precipitation 0.1 90 < th dose dependent rect. 24 5
409 154.20 wind 7.0 90 < th dose independent rect. 5 19
417 154.23 temperature 10.0 1440 > th dose independent rect. 19 6
420 154.23 temperature 30.0 1440 < th dose independent rect. 19 6
424 154.23 humidity 50.0 1440 > th dose independent rect. 19 6
426 154.23 atmosphere 995.0 1440 > th dose independent rect. 19 6
427 154.23 radiation 1.0 1440 < th dose independent rect. 19 6
448 154.23 temperature 10.0 1440 > th dose independent rect. 1 18
453 154.24 atmosphere 1015.0 30 < th dose dependent rect. 5 6
454 154.25 wind 7.0 90 < th dose independent rect. 24 5
455 154.25 radiation 1.0 90 < th dose independent rect. 24 5
472 154.32 atmosphere 1010.0 90 < th dose independent rect. 24 5
475 154.33 temperature 10.0 90 > th dose independent rect. 24 5
476 154.33 temperature 30.0 90 < th dose independent rect. 24 5
477 154.33 humidity 50.0 90 > th dose independent rect. 24 5
506 154.39 radiation 10.0 10 < th dose dependent rect. 18 6
512 154.41 radiation 10.0 10 < th dose independent rect. 18 6
520 154.42 wind 9.0 10 < th dose independent rect. 18 6
527 154.44 humidity 50.0 10 > th dose independent rect. 18 6
531 154.44 temperature 10.0 10 > th dose independent rect. 24 18
532 154.44 humidity 50.0 10 > th dose dependent rect. 24 7
533 154.44 wind 9.0 90 < th dose dependent rect. 5 18
542 154.50 atmosphere 1015.0 10 < th dose independent rect. 24 18
553 154.53 atmosphere 995.0 10 > th dose independent rect. 18 6
554 154.53 precipitation 0.1 90 < th dose independent rect. 23 23
557 154.53 precipitation 0.1 90 < th dose dependent rect. 23 23
578 154.61 atmosphere 1005.0 90 > th dose independent rect. 22 1
585 154.62 precipitation 0.1 90 < th dose independent rect. 5 19
586 154.62 wind 9.0 90 < th dose dependent rect. 24 5
587 154.62 precipitation 0.1 90 < th dose dependent rect. 5 19
589 154.63 wind 9.0 30 < th dose dependent rect. 18 6
600 154.67 precipitation 0.1 30 < th dose independent rect. 24 18
601 154.67 precipitation 0.1 30 < th dose dependent rect. 24 18
625 154.76 humidity 70.0 10 > th dose independent rect. 24 9
638 154.80 atmosphere 1010.0 30 < th dose independent rect. 5 6
641 154.81 wind 9.0 14400 > th dose independent rect. 6 6
647 154.82 temperature 10.0 30 > th dose dependent rect. 24 7
654 154.85 temperature 20.0 270 > th dose dependent rect. 19 2
655 154.86 wind 9.0 30 < th dose independent rect. 24 18
659 154.88 atmosphere 995.0 10 > th dose independent rect. 7 17
702 154.95 atmosphere 995.0 10 > th dose dependent rect. 24 22
722 154.98 temperature 20.0 30 > th dose independent rect. 9 15
728 155.00 temperature 30.0 10 < th dose dependent rect. 24 7
760 155.11 wind 5.0 10 < th dose independent rect. 22 2
766 155.14 atmosphere 1015.0 10 < th dose independent rect. 18 6
768 155.14 atmosphere 1010.0 90 < th dose dependent rect. 5 4
783 155.18 wind 9.0 14400 > th dose independent rect. 9 3
794 155.19 radiation 1.0 30 < th dose independent rect. 5 19
808 155.23 wind 9.0 14400 < th dose independent rect. 5 7
809 155.23 humidity 60.0 270 > th dose independent rect. 3 10
822 155.27 temperature 10.0 1440 > th dose independent rect. 6 6
825 155.27 atmosphere 995.0 1440 > th dose independent rect. 6 6
826 155.27 temperature 10.0 1440 > th dose independent rect. 12 18
836 155.29 humidity 50.0 90 > th dose dependent rect. 24 5
864 155.37 wind 9.0 14400 < th dose independent rect. 9 3
872 155.38 temperature 15.0 270 > th dose independent rect. 3 10
921 155.44 humidity 50.0 30 > th dose dependent rect. 7 17
935 155.47 radiation 10.0 14400 < th dose dependent rect. 23 1
936 155.47 temperature 10.0 30 > th dose dependent rect. 24 5
939 155.48 atmosphere 1000.0 10 > th dose independent rect. 24 12
967 155.50 wind 1.0 270 > th dose independent rect. 23 18
976 155.50 radiation 1.0 30 < th dose dependent rect. 11 13