Os03g0704700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oxysterol-binding protein family protein.
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Os03g0704700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oxysterol-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.17 | 0.305 | 9.99 | -1.21 | 0.397 | -0.659 | -0.752 | 1.08 | -0.249 | 7.43 | 20.8 | 93 | -- | -- |
| 44.91 | 0.312 | 9.97 | -1.24 | 0.513 | -0.506 | -1.35 | -- | -0.238 | 9.15 | 24.76 | 107 | -- | -- |
| 42.89 | 0.305 | 9.98 | -1.21 | 0.439 | -0.53 | -- | 1.32 | -0.238 | 9.1 | 22.97 | 72 | -- | -- |
| 50.8 | 0.332 | 9.98 | -1.23 | 0.508 | -0.495 | -- | -- | -0.233 | 8.85 | 20 | 118 | -- | -- |
| 49.48 | 0.328 | 9.99 | -1.16 | -- | -0.715 | -- | 1.52 | -0.246 | -- | 20.43 | 60 | -- | -- |
| 49.83 | 0.331 | 9.97 | -1.17 | 0.843 | -- | -1.12 | -- | -0.196 | 10.8 | -- | -- | -- | -- |
| 54.97 | 0.347 | 9.97 | -1.22 | 0.848 | -- | -- | -- | -0.199 | 10.9 | -- | -- | -- | -- |
| 57.12 | 0.352 | 10 | -1.2 | -- | -0.684 | -- | -- | -0.24 | -- | 12.3 | 49 | -- | -- |
| 90.38 | 0.443 | 9.95 | -- | 0.594 | -0.554 | -- | -- | -0.0922 | 10 | 68.36 | 109 | -- | -- |
| 99.62 | 0.466 | 9.99 | -1.24 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 94.13 | 0.454 | 9.94 | -- | 0.858 | -- | -- | -- | -0.0628 | 11 | -- | -- | -- | -- |
| 95.14 | 0.454 | 9.97 | -- | -- | -0.688 | -- | -- | -0.105 | -- | 10 | 55 | -- | -- |
| 139.99 | 0.552 | 9.96 | -- | -- | -- | -- | -- | -0.0671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.54 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 17 |
| 2 | 39.71 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 5 | 39.81 | radiation | 30 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 7 | 39.86 | radiation | 10 | 90 | < th | dose independent | sin | 22 | NA |
| 9 | 39.86 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 15 |
| 10 | 39.91 | radiation | 10 | 30 | < th | dose independent | rect. | 4 | 19 |
| 16 | 40.07 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 19 |
| 28 | 40.18 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 19 |
| 36 | 40.22 | humidity | 70 | 90 | > th | dose independent | rect. | 2 | 21 |
| 47 | 40.30 | radiation | 30 | 30 | < th | dose dependent | rect. | 9 | 14 |
| 70 | 40.48 | radiation | 10 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 71 | 40.49 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 13 |
| 90 | 40.60 | temperature | 15 | 10 | > th | dose independent | rect. | 23 | 17 |
| 93 | 40.61 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 19 |
| 159 | 40.93 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 5 |
| 165 | 40.95 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 176 | 41.00 | temperature | 15 | 270 | > th | dose independent | rect. | 23 | 1 |
| 184 | 41.03 | radiation | 10 | 270 | < th | dose independent | rect. | 9 | 10 |
| 192 | 41.06 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 12 |
| 229 | 41.16 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 233 | 41.18 | temperature | 15 | 270 | > th | dose independent | rect. | 20 | 19 |
| 263 | 41.26 | humidity | 50 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 332 | 41.43 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 341 | 41.46 | temperature | 15 | 10 | > th | dose independent | rect. | 23 | 5 |
| 348 | 41.48 | humidity | 70 | 10 | > th | dose independent | rect. | 9 | 14 |
| 368 | 41.53 | temperature | 15 | 10 | > th | dose independent | rect. | 23 | 3 |
| 386 | 41.55 | humidity | 50 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 390 | 41.57 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 17 |
| 409 | 41.60 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 431 | 41.65 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 13 |
| 696 | 42.17 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 11 |
| 712 | 42.19 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 731 | 42.24 | humidity | 70 | 90 | > th | dose independent | sin | 22 | NA |
| 750 | 42.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 753 | 42.27 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 23 | 3 |
| 772 | 42.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 773 | 42.30 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 780 | 42.30 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 787 | 42.31 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 802 | 42.34 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 869 | 42.43 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 23 | 5 |
| 901 | 42.46 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 23 | 1 |
| 993 | 42.56 | humidity | 70 | 10 | < th | dose independent | rect. | 10 | 22 |