Os03g0704400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os03g0704400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.08 | 0.556 | 4.91 | 1.13 | 0.777 | -56.1 | 0.222 | -112 | 0.0068 | 20.5 | 15.03 | 1398 | -- | -- |
| 154.03 | 0.582 | 4.25 | -0.547 | 0.796 | -2.32 | 0.0808 | -- | -0.0564 | 20.4 | 15.03 | 1398 | -- | -- |
| 140.23 | 0.552 | 4.91 | 1.11 | 0.776 | -55.9 | -- | -112 | 0.00573 | 20.6 | 15.04 | 1392 | -- | -- |
| 140.91 | 0.553 | 4.23 | -0.298 | 0.798 | -2.54 | -- | -- | 0.0177 | 20.5 | 15.85 | 1704 | -- | -- |
| 173.96 | 0.614 | 4.9 | 1.17 | -- | -55.9 | -- | -112 | 0.00777 | -- | 15.04 | 1446 | -- | -- |
| 164.22 | 0.601 | 4.25 | -0.643 | 0.819 | -- | -0.158 | -- | -0.0798 | 20.6 | -- | -- | -- | -- |
| 164.3 | 0.6 | 4.25 | -0.638 | 0.82 | -- | -- | -- | -0.0797 | 20.6 | -- | -- | -- | -- |
| 176.34 | 0.618 | 4.21 | -0.297 | -- | -2.69 | -- | -- | 0.012 | -- | 15.88 | 1616 | -- | -- |
| 142.92 | 0.557 | 4.22 | -- | 0.8 | -2.78 | -- | -- | 0.058 | 20.5 | 15.84 | 1754 | -- | -- |
| 202.01 | 0.664 | 4.23 | -0.641 | -- | -- | -- | -- | -0.0873 | -- | -- | -- | -- | -- |
| 175.04 | 0.619 | 4.24 | -- | 0.822 | -- | -- | -- | -0.00857 | 20.5 | -- | -- | -- | -- |
| 178.39 | 0.622 | 4.2 | -- | -- | -2.93 | -- | -- | 0.051 | -- | 15.82 | 1634 | -- | -- |
| 212.86 | 0.681 | 4.21 | -- | -- | -- | -- | -- | -0.0161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 21 | 132.06 | temperature | 25 | 10 | < th | dose dependent | sin | 17 | NA |
| 34 | 133.04 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 60 | 134.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 71 | 134.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 73 | 134.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 89 | 134.77 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 11 |
| 110 | 135.10 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 113 | 135.14 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 10 |
| 160 | 135.94 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 164 | 136.02 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 8 |
| 172 | 136.07 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 12 |
| 194 | 136.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 226 | 136.90 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 14 |
| 231 | 136.91 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 7 |
| 266 | 137.31 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 4 |
| 294 | 137.62 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 316 | 137.77 | temperature | 10 | 10 | > th | dose dependent | sin | 16 | NA |
| 324 | 137.85 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 4 |
| 333 | 137.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 347 | 138.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 349 | 138.06 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 351 | 138.09 | temperature | 20 | 720 | > th | dose independent | sin | 22 | NA |
| 352 | 138.11 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 6 |
| 380 | 138.28 | temperature | 15 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 401 | 138.41 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 409 | 138.50 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 419 | 138.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 453 | 138.72 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 495 | 138.91 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 508 | 138.97 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 511 | 138.98 | wind | 9 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 546 | 139.16 | temperature | 15 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 581 | 139.28 | temperature | 15 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 589 | 139.31 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 607 | 139.35 | temperature | 15 | 1440 | > th | dose independent | sin | 12 | NA |
| 619 | 139.38 | temperature | 15 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 623 | 139.41 | temperature | 15 | 1440 | < th | dose independent | sin | 11 | NA |
| 653 | 139.47 | temperature | 15 | 1440 | < th | dose dependent | sin | 7 | NA |
| 667 | 139.48 | temperature | 15 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 668 | 139.48 | temperature | 15 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 686 | 139.49 | temperature | 15 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 690 | 139.49 | temperature | 15 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 698 | 139.50 | temperature | 15 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 765 | 139.58 | temperature | 15 | 1440 | < th | dose dependent | rect. | 1 | 14 |
| 813 | 139.64 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 862 | 139.70 | temperature | 15 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 907 | 139.75 | temperature | 15 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 910 | 139.76 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 927 | 139.79 | temperature | 15 | 1440 | < th | dose dependent | rect. | 23 | 3 |