Os03g0704100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP fibrillin family protein.
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Os03g0704100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP fibrillin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.92 | 0.583 | 10.6 | -0.489 | 3.4 | -1.19 | 2.35 | 9.47 | -0.856 | 8.47 | 26.45 | 3776 | -- | -- |
| 163.78 | 0.596 | 10.8 | -1.97 | 3.48 | -0.578 | 2.3 | -- | -0.982 | 8.43 | 13.23 | 24597 | -- | -- |
| 171.22 | 0.609 | 10.6 | -0.428 | 3.4 | -1.23 | -- | 9.74 | -0.891 | 8.46 | 26.99 | 3797 | -- | -- |
| 178.25 | 0.622 | 10.8 | -2 | 3.47 | -0.583 | -- | -- | -0.956 | 8.44 | 14.5 | 15646 | -- | -- |
| 757.22 | 1.28 | 10.6 | 0.685 | -- | -2.42 | -- | 11.4 | -0.38 | -- | 25.24 | 2131 | -- | -- |
| 169.49 | 0.61 | 10.8 | -2.51 | 3.46 | -- | 2.17 | -- | -1.2 | 8.49 | -- | -- | -- | -- |
| 184.57 | 0.636 | 10.8 | -2.44 | 3.46 | -- | -- | -- | -1.2 | 8.48 | -- | -- | -- | -- |
| 838.97 | 1.35 | 10.8 | -1.65 | -- | -0.928 | -- | -- | -0.816 | -- | 14.73 | 22360 | -- | -- |
| 198.9 | 0.657 | 10.6 | -- | 3.44 | -1.93 | -- | -- | -0.356 | 8.44 | 7.427 | 47520 | -- | -- |
| 852.52 | 1.36 | 10.9 | -2.43 | -- | -- | -- | -- | -1.17 | -- | -- | -- | -- | -- |
| 341.85 | 0.865 | 10.8 | -- | 3.45 | -- | -- | -- | -0.931 | 8.53 | -- | -- | -- | -- |
| 859.48 | 1.37 | 10.7 | -- | -- | -1.96 | -- | -- | -0.313 | -- | 7.301 | 47520 | -- | -- |
| 1007.91 | 1.48 | 10.9 | -- | -- | -- | -- | -- | -0.9 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 2 | 150.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 3 | 150.58 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 3 |
| 7 | 151.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 8 | 151.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 9 | 151.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 16 | 152.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 36 | 152.24 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 49 | 152.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 58 | 152.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 110 | 152.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 134 | 152.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 153 | 153.13 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 186 | 153.29 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 188 | 153.30 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 190 | 153.31 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 191 | 153.31 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 200 | 153.34 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 201 | 153.34 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 203 | 153.36 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 215 | 153.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 225 | 153.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 226 | 153.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 230 | 153.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 231 | 153.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 241 | 153.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 301 | 153.71 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 341 | 153.85 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 348 | 153.87 | wind | 3 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 356 | 153.90 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 12 |
| 380 | 153.94 | wind | 1 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 444 | 154.15 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 454 | 154.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 489 | 154.23 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 494 | 154.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 495 | 154.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 497 | 154.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 506 | 154.28 | wind | 1 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 508 | 154.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 509 | 154.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 519 | 154.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 553 | 154.41 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 566 | 154.47 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 643 | 154.63 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 695 | 154.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 706 | 154.72 | temperature | 30 | 4320 | < th | dose independent | sin | 19 | NA |
| 759 | 154.79 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 780 | 154.81 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 798 | 154.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 833 | 154.90 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 894 | 154.97 | wind | 1 | 720 | < th | dose independent | rect. | 9 | 17 |
| 914 | 154.99 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 915 | 155.00 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 925 | 155.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 940 | 155.03 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 954 | 155.07 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 969 | 155.10 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |