Os03g0704000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 30S ribosomal protein S13, chloroplast precursor (CS13).
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Os03g0704000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 30S ribosomal protein S13, chloroplast precursor (CS13).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.24 | 0.374 | 15.1 | -0.187 | 1.36 | 1.31 | 0.0592 | -1.2 | -0.666 | 22.7 | 24.88 | 336 | -- | -- |
| 63.71 | 0.372 | 15 | -0.0352 | 1.37 | 1.17 | 0.0755 | -- | -0.633 | 22.6 | 24.55 | 331 | -- | -- |
| 63.25 | 0.37 | 15.1 | -0.191 | 1.35 | 1.31 | -- | -1.21 | -0.665 | 22.7 | 24.9 | 336 | -- | -- |
| 63.7 | 0.372 | 15 | -0.0335 | 1.36 | 1.18 | -- | -- | -0.633 | 22.6 | 24.65 | 335 | -- | -- |
| 133.53 | 0.538 | 15.1 | -0.38 | -- | 1.93 | -- | -1.03 | -0.762 | -- | 24.2 | 722 | -- | -- |
| 87.77 | 0.439 | 15 | 0.181 | 1.56 | -- | 0.191 | -- | -0.521 | 21.3 | -- | -- | -- | -- |
| 87.9 | 0.439 | 15 | 0.174 | 1.56 | -- | -- | -- | -0.521 | 21.3 | -- | -- | -- | -- |
| 135.13 | 0.541 | 15 | -0.215 | -- | 1.82 | -- | -- | -0.714 | -- | 24.24 | 715 | -- | -- |
| 63.73 | 0.372 | 15 | -- | 1.36 | 1.18 | -- | -- | -0.628 | 22.6 | 24.67 | 335 | -- | -- |
| 229.81 | 0.708 | 15 | 0.181 | -- | -- | -- | -- | -0.528 | -- | -- | -- | -- | -- |
| 88.7 | 0.441 | 15 | -- | 1.56 | -- | -- | -- | -0.54 | 21.3 | -- | -- | -- | -- |
| 136.34 | 0.544 | 15 | -- | -- | 1.79 | -- | -- | -0.684 | -- | 24.3 | 713 | -- | -- |
| 230.68 | 0.709 | 15 | -- | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.68 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 7 | 62.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 8 | 62.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 13 | 62.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 18 | 63.09 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 35 | 63.43 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 45 | 63.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 46 | 63.57 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 154 | 64.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 164 | 64.82 | temperature | 25 | 720 | > th | dose dependent | sin | 4 | NA |
| 172 | 64.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 328 | 66.13 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 424 | 66.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 432 | 66.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 447 | 66.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 511 | 67.05 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 674 | 67.67 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 10 |
| 772 | 67.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 796 | 68.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 798 | 68.01 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 8 |
| 821 | 68.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 854 | 68.25 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 868 | 68.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 908 | 68.46 | temperature | 25 | 720 | > th | dose independent | sin | 2 | NA |
| 953 | 68.59 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 14 |
| 963 | 68.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 970 | 68.64 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 9 |