Os03g0703200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0703200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.59 | 0.334 | 13.3 | 0.191 | 1.22 | 0.92 | 0.893 | -0.304 | 0.51 | 22.8 | 11.43 | 15 | -- | -- |
| 50.81 | 0.332 | 13.3 | 0.178 | 1.25 | 0.892 | 0.6 | -- | 0.508 | 22.8 | 11.41 | 18 | -- | -- |
| 51.16 | 0.333 | 13.3 | 0.161 | 1.21 | 0.924 | -- | 0.391 | 0.509 | 22.7 | 11.26 | 14 | -- | -- |
| 52 | 0.336 | 13.3 | 0.165 | 1.21 | 0.927 | -- | -- | 0.508 | 22.7 | 11.79 | 14 | -- | -- |
| 69.76 | 0.389 | 13.2 | 0.179 | -- | 1.75 | -- | 0.304 | 0.531 | -- | 7.712 | 6 | -- | -- |
| 63.92 | 0.375 | 13.3 | 0.188 | 2.22 | -- | 0.614 | -- | 0.464 | 23.3 | -- | -- | -- | -- |
| 65.54 | 0.379 | 13.3 | 0.164 | 2.22 | -- | -- | -- | 0.461 | 23.3 | -- | -- | -- | -- |
| 70.32 | 0.391 | 13.2 | 0.168 | -- | 1.75 | -- | -- | 0.527 | -- | 7.713 | 6 | -- | -- |
| 52.71 | 0.338 | 13.3 | -- | 1.21 | 0.928 | -- | -- | 0.49 | 22.7 | 11.42 | 14 | -- | -- |
| 373.07 | 0.903 | 13.3 | 0.219 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 66.24 | 0.381 | 13.3 | -- | 2.22 | -- | -- | -- | 0.443 | 23.3 | -- | -- | -- | -- |
| 71.06 | 0.393 | 13.2 | -- | -- | 1.75 | -- | -- | 0.508 | -- | 7.837 | 6 | -- | -- |
| 374.33 | 0.903 | 13.3 | -- | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.59 | radiation | 1.0 | 90 | > th | dose independent | sin | 3 | NA |
| 2 | 46.79 | radiation | 10.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 3 | 46.91 | radiation | 1.0 | 90 | < th | dose independent | sin | 2 | NA |
| 16 | 48.27 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 19 | 48.55 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 53 | 49.63 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 58 | 49.72 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 76 | 49.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 79 | 50.04 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 80 | 50.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 21 |
| 101 | 50.26 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 201 | 51.02 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 209 | 51.05 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 223 | 51.11 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 226 | 51.11 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 234 | 51.14 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 261 | 51.27 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 320 | 51.52 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 10 |
| 376 | 51.68 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 436 | 51.87 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 596 | 52.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 633 | 52.45 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 658 | 52.55 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 17 |
| 671 | 52.58 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 24 | 21 |
| 699 | 52.69 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 716 | 52.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 22 |
| 718 | 52.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 757 | 52.88 | humidity | 60.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 806 | 53.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 823 | 53.03 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 867 | 53.13 | humidity | 80.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 889 | 53.17 | humidity | 60.0 | 30 | > th | dose independent | rect. | 13 | 17 |
| 946 | 53.29 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 947 | 53.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 23 |