Os03g0703100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-glucosidase.
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Os03g0703100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-glucosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.66 | 0.647 | 5.72 | -2.25 | 0.863 | -0.794 | 0.446 | 3.77 | -0.937 | 23.6 | 19.99 | 551 | -- | -- |
| 211.1 | 0.677 | 5.72 | -2.12 | 0.82 | -0.672 | 0.796 | -- | -0.871 | 23.5 | 9.972 | 567 | -- | -- |
| 190.49 | 0.643 | 5.72 | -2.25 | 0.863 | -0.794 | -- | 4.09 | -0.937 | 23.6 | 19.99 | 551 | -- | -- |
| 215.29 | 0.683 | 5.72 | -2.08 | 0.819 | -0.649 | -- | -- | -0.867 | 23.6 | 9.996 | 552 | -- | -- |
| 234.46 | 0.713 | 5.71 | -2.24 | -- | -0.677 | -- | 4.11 | -0.931 | -- | 19.97 | 629 | -- | -- |
| 222.5 | 0.699 | 5.71 | -2.14 | 0.895 | -- | 0.597 | -- | -0.825 | 21.8 | -- | -- | -- | -- |
| 223.6 | 0.7 | 5.71 | -2.16 | 0.901 | -- | -- | -- | -0.824 | 21.5 | -- | -- | -- | -- |
| 238.82 | 0.723 | 5.69 | -2.21 | -- | 0.563 | -- | -- | -0.873 | -- | 9.996 | 552 | -- | -- |
| 319.37 | 0.832 | 5.71 | -- | 1.02 | -1.11 | -- | -- | -0.683 | 23.7 | 9.932 | 1973 | -- | -- |
| 271.39 | 0.77 | 5.68 | -2.15 | -- | -- | -- | -- | -0.827 | -- | -- | -- | -- | -- |
| 346.23 | 0.87 | 5.65 | -- | 0.899 | -- | -- | -- | -0.584 | 21.3 | -- | -- | -- | -- |
| 306.26 | 0.815 | 5.73 | -- | -- | -2.23 | -- | -- | -0.727 | -- | 9.711 | 3947 | -- | -- |
| 393.41 | 0.926 | 5.63 | -- | -- | -- | -- | -- | -0.588 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.36 | radiation | 40.0 | 10 | < th | dose independent | rect. | 21 | 16 |
| 3 | 186.55 | radiation | 40.0 | 90 | < th | dose independent | rect. | 20 | 17 |
| 10 | 186.96 | radiation | 30.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 15 | 187.94 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 22 | 188.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 38 | 190.36 | radiation | 20.0 | 720 | < th | dose independent | rect. | 22 | 15 |
| 46 | 190.69 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 49 | 190.78 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 53 | 190.85 | radiation | 10.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 74 | 191.31 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 78 | 191.34 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 79 | 191.39 | humidity | 90.0 | 10 | < th | dose independent | rect. | 11 | 9 |
| 89 | 191.58 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 138 | 192.53 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 10 | 9 |
| 181 | 193.21 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 24 | 14 |
| 184 | 193.26 | radiation | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 189 | 193.33 | radiation | 40.0 | 10 | < th | dose independent | rect. | 7 | 6 |
| 191 | 193.38 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 18 | 21 |
| 204 | 193.54 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 222 | 193.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 232 | 194.03 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 10 | 20 |
| 244 | 194.13 | humidity | 60.0 | 90 | > th | dose independent | rect. | 20 | 16 |
| 247 | 194.16 | humidity | 90.0 | 10 | < th | dose independent | rect. | 11 | 7 |
| 250 | 194.20 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 270 | 194.32 | radiation | 1.0 | 30 | > th | dose independent | rect. | 7 | 11 |
| 295 | 194.54 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 298 | 194.57 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 309 | 194.68 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 10 |
| 335 | 194.87 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 339 | 194.89 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 343 | 194.95 | radiation | 20.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 405 | 195.11 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 432 | 195.16 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 440 | 195.18 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 20 | 17 |
| 493 | 195.48 | radiation | 1.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 508 | 195.53 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 539 | 195.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 586 | 195.90 | humidity | 90.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 589 | 195.91 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 2 | 10 |
| 595 | 195.94 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 609 | 195.99 | radiation | 10.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 677 | 196.25 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 689 | 196.28 | humidity | 60.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 711 | 196.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 723 | 196.38 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 772 | 196.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 773 | 196.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 774 | 196.50 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 783 | 196.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 14 |
| 786 | 196.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 803 | 196.60 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 811 | 196.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 813 | 196.65 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 10 |
| 817 | 196.65 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 820 | 196.66 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 828 | 196.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 834 | 196.74 | humidity | 90.0 | 90 | < th | dose dependent | sin | 19 | NA |
| 859 | 196.85 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 11 |
| 887 | 196.93 | radiation | 1.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 917 | 196.99 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 922 | 197.00 | temperature | 15.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 927 | 197.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 928 | 197.01 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 937 | 197.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 980 | 197.14 | radiation | 20.0 | 720 | < th | dose independent | rect. | 1 | 10 |
| 989 | 197.16 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 24 | 7 |