Os03g0700700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipoxygenase (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os03g0700700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipoxygenase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.6 | 0.539 | 10.5 | -0.24 | 0.839 | 1.08 | -0.293 | 0.901 | -0.0124 | 6.83 | 1.01 | 14422 | -- | -- |
| 132.05 | 0.535 | 10.5 | -0.388 | 0.875 | 1.04 | -0.359 | -- | -0.0194 | 6.69 | 1.26 | 15887 | -- | -- |
| 130.9 | 0.533 | 10.5 | -0.262 | 0.856 | 1.1 | -- | 0.936 | -0.01 | 6.83 | 0.911 | 15866 | -- | -- |
| 131.82 | 0.535 | 10.5 | -0.438 | 0.838 | 0.965 | -- | -- | -0.0214 | 6.85 | 1.239 | 15884 | -- | -- |
| 167.17 | 0.602 | 10.5 | -0.276 | -- | 1.18 | -- | 0.975 | -0.0139 | -- | 0.94 | 15885 | -- | -- |
| 153.91 | 0.582 | 10.4 | -0.0606 | 0.851 | -- | -0.261 | -- | 0.22 | 6.76 | -- | -- | -- | -- |
| 154.08 | 0.581 | 10.4 | -0.0649 | 0.85 | -- | -- | -- | 0.221 | 6.77 | -- | -- | -- | -- |
| 168.44 | 0.604 | 10.5 | -0.478 | -- | 1.02 | -- | -- | -0.0142 | -- | 1.1 | 15887 | -- | -- |
| 136.06 | 0.543 | 10.5 | -- | 0.839 | 0.81 | -- | -- | 0.022 | 6.94 | 1.41 | 15845 | -- | -- |
| 191.9 | 0.647 | 10.5 | -0.0458 | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
| 154.2 | 0.581 | 10.4 | -- | 0.85 | -- | -- | -- | 0.228 | 6.78 | -- | -- | -- | -- |
| 172.44 | 0.612 | 10.5 | -- | -- | 0.877 | -- | -- | -0.0129 | -- | 1.5 | 15885 | -- | -- |
| 191.96 | 0.647 | 10.5 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 3 | 123.88 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 19 |
| 6 | 124.74 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 7 | 125.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 8 | 125.34 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 9 | 125.48 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 18 | 126.07 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 28 | 126.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 32 | 127.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 35 | 127.36 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 37 | 127.48 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 39 | 127.50 | radiation | 1 | 4320 | > th | dose independent | sin | 9 | NA |
| 46 | 127.55 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 56 | 127.64 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 62 | 127.69 | radiation | 1 | 4320 | < th | dose independent | sin | 9 | NA |
| 64 | 127.70 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 68 | 127.72 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 102 | 127.83 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 140 | 128.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 144 | 128.12 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 146 | 128.16 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 148 | 128.16 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 10 |
| 150 | 128.17 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 154 | 128.18 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 12 |
| 157 | 128.20 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 8 |
| 162 | 128.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 190 | 128.32 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 15 |
| 303 | 128.90 | radiation | 1 | 4320 | < th | dose dependent | sin | 8 | NA |
| 307 | 128.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 331 | 129.02 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 339 | 129.11 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 399 | 129.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 403 | 129.41 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 428 | 129.69 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 446 | 129.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 15 |
| 460 | 129.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 467 | 129.84 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 511 | 130.06 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 539 | 130.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 544 | 130.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 562 | 130.26 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 588 | 130.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 593 | 130.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 597 | 130.37 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 650 | 130.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 651 | 130.50 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 674 | 130.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 754 | 130.63 | wind | 7 | 270 | < th | dose independent | rect. | 20 | 19 |
| 756 | 130.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 776 | 130.67 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 8 |
| 779 | 130.67 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 791 | 130.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 798 | 130.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 902 | 130.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 959 | 130.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 964 | 130.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 994 | 130.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 13 |