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Os03g0700400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lipoxygenase 1 (EC 1.13.11.12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.43 (0.031) R2 : 0.443
β1 : 2.12 (0.131) R2dD : 0.452 R2D : 0.0259
β2 : 0.62 (0.0735) R2dC : 0.0767 R2C : 0.0153
β3 : -1.86 (0.148) R2dE : 0.312 R2E : -0.166
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.564 (0.0701) R2dN8 : 0.151 R2N8 : -0.0398
σ : 0.568
deviance : 148.88
__
_____
C
peak time of C : 1.32
E
wheather : temperature
threshold : 18.5
memory length : 2378
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.9 0.548 9.34 2.39 0.572 -1.08 0.307 2.94 0.728 1.5 20.31 1171 -- --
155.37 0.581 9.45 2.4 0.586 -1.54 0.806 -- 0.642 2.38 18.8 2406 -- --
136.03 0.543 9.34 2.38 0.585 -1.07 -- 2.97 0.725 1.38 20.3 1116 -- --
148.88 0.568 9.43 2.12 0.62 -1.86 -- -- 0.564 1.32 18.5 2378 -- --
155.36 0.581 9.33 2.42 -- -0.977 -- 3.23 0.736 -- 20.31 1301 -- --
204.84 0.671 9.49 1.3 0.453 -- 0.974 -- 0.303 1.73 -- -- -- --
208.54 0.676 9.5 1.27 0.452 -- -- -- 0.298 1.51 -- -- -- --
168.85 0.605 9.42 2.15 -- -1.85 -- -- 0.641 -- 18.4 2379 -- --
232.67 0.71 9.51 -- 0.535 -1.24 -- -- 0.264 1.6 17.2 2375 -- --
221.09 0.695 9.49 1.29 -- -- -- -- 0.308 -- -- -- -- --
251.08 0.741 9.53 -- 0.475 -- -- -- 0.156 1.6 -- -- -- --
250.32 0.737 9.51 -- -- -1.14 -- -- 0.248 -- 17.21 2347 -- --
264.88 0.76 9.52 -- -- -- -- -- 0.165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.44 radiation 30 4320 < th dose independent rect. 7 1
2 123.67 radiation 30 4320 < th dose independent rect. 20 12
3 123.77 radiation 30 4320 < th dose independent rect. 22 10
8 124.12 radiation 30 4320 < th dose independent rect. 24 8
9 124.17 radiation 30 4320 < th dose independent rect. 2 6
12 124.29 radiation 30 4320 < th dose independent rect. 4 4
16 124.97 radiation 20 4320 > th dose dependent rect. 7 1
31 128.55 temperature 20 1440 > th dose independent rect. 19 8
35 128.80 temperature 20 1440 > th dose independent rect. 20 5
37 128.94 temperature 20 1440 < th dose independent rect. 21 4
39 128.97 temperature 20 1440 < th dose independent rect. 19 8
41 129.09 temperature 20 1440 < th dose independent rect. 18 10
46 129.26 temperature 20 1440 < th dose independent rect. 20 6
69 130.64 temperature 20 1440 > th dose independent rect. 17 14
73 130.75 temperature 20 1440 < th dose independent rect. 17 14
83 131.11 temperature 20 1440 > th dose independent sin 12 NA
88 131.28 temperature 20 1440 < th dose independent sin 12 NA
101 131.44 temperature 20 1440 < th dose dependent rect. 3 1
121 131.92 radiation 20 4320 > th dose independent rect. 7 1
131 132.20 temperature 20 720 > th dose independent sin 5 NA
134 132.22 atmosphere 995 43200 < th dose dependent rect. 10 20
141 132.30 temperature 20 720 > th dose independent rect. 23 16
160 132.40 wind 9 43200 > th dose independent rect. 10 2
188 132.91 wind 9 43200 < th dose independent rect. 4 10
192 132.99 atmosphere 995 43200 < th dose dependent rect. 11 16
194 133.02 wind 9 43200 > th dose independent rect. 4 10
208 133.16 atmosphere 995 43200 < th dose independent rect. 22 17
226 133.36 wind 9 43200 < th dose independent rect. 21 17
231 133.40 wind 9 43200 > th dose independent rect. 21 17
234 133.47 atmosphere 995 43200 < th dose independent sin 5 NA
239 133.54 wind 9 43200 < th dose independent rect. 10 2
281 133.88 temperature 20 720 < th dose independent sin 5 NA
285 133.90 wind 9 43200 > th dose independent rect. 7 7
342 134.37 wind 9 43200 > th dose independent sin 4 NA
347 134.41 atmosphere 995 43200 > th dose independent rect. 18 20
353 134.47 wind 7 43200 > th dose dependent rect. 4 10
360 134.52 wind 9 43200 < th dose independent sin 4 NA
364 134.61 wind 9 43200 > th dose dependent rect. 10 4
369 134.64 temperature 20 720 < th dose independent rect. 23 16
370 134.65 wind 9 43200 < th dose independent rect. 9 4
386 134.79 wind 7 43200 > th dose dependent rect. 21 17
404 134.96 wind 7 43200 > th dose dependent rect. 8 6
423 135.08 atmosphere 995 43200 > th dose independent rect. 1 12
431 135.13 atmosphere 995 43200 > th dose independent sin 6 NA
453 135.28 atmosphere 995 43200 < th dose dependent no NA NA
454 135.28 atmosphere 995 43200 < th dose dependent rect. 21 22
473 135.38 wind 7 43200 > th dose dependent rect. 10 2
492 135.47 atmosphere 995 43200 < th dose dependent sin 17 NA
539 135.73 temperature 25 4320 < th dose independent rect. 14 1
552 135.82 wind 9 43200 > th dose dependent rect. 9 9
558 135.86 atmosphere 995 43200 < th dose dependent rect. 1 23
587 136.08 temperature 20 1440 > th dose independent rect. 6 1
591 136.11 temperature 20 720 < th dose independent rect. 1 14
626 136.34 temperature 25 4320 > th dose independent rect. 14 1
662 136.54 wind 9 43200 > th dose dependent rect. 10 22
666 136.56 atmosphere 995 43200 < th dose dependent sin 8 NA
704 136.72 wind 7 43200 > th dose dependent sin 5 NA
741 136.92 atmosphere 995 43200 < th dose dependent rect. 21 14
755 136.96 atmosphere 995 43200 > th dose independent rect. 3 8
758 136.97 atmosphere 995 43200 < th dose independent rect. 2 10
809 137.24 atmosphere 995 43200 < th dose independent rect. 3 8
829 137.33 atmosphere 995 43200 > th dose independent rect. 4 6
841 137.35 wind 9 43200 > th dose dependent rect. 9 13
847 137.37 temperature 20 1440 < th dose independent rect. 5 2
861 137.42 wind 9 43200 > th dose dependent sin 21 NA
897 137.56 atmosphere 995 43200 > th dose independent rect. 5 4