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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0699700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 9-lipoxigenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0195) R2 : 0.00737
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0754 (0.041) R2dN8 : 0.00952 R2N8 : 0.00737
σ : 0.367
deviance : 61.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.08 0.355 2.92 -0.0255 0.104 -0.239 -0.832 0.324 0.14 4.35 10.81 1374 -- --
57.24 0.352 2.92 -0.0725 0.0999 -0.244 -0.798 -- 0.137 4.24 10.82 1314 -- --
58.79 0.357 2.92 -0.00872 0.0963 -0.241 -- 0.208 0.139 5.94 10.52 1381 -- --
58.88 0.357 2.92 -0.0191 0.11 -0.249 -- -- 0.143 6.47 10.65 1388 -- --
58.41 0.356 2.92 -0.0294 -- -0.324 -- 0.817 0.14 -- 13.45 2079 -- --
58.85 0.36 2.94 -0.144 0.0929 -- -0.85 -- 0.0538 4.45 -- -- -- --
60.38 0.364 2.94 -0.136 0.126 -- -- -- 0.0584 7.25 -- -- -- --
59.12 0.358 2.92 -0.0674 -- -0.315 -- -- 0.115 -- 12.18 2114 -- --
58.91 0.357 2.92 -- 0.115 -0.247 -- -- 0.146 6.43 10.63 1426 -- --
61.22 0.366 2.94 -0.134 -- -- -- -- 0.0606 -- -- -- -- --
60.86 0.365 2.94 -- 0.125 -- -- -- 0.0736 7.32 -- -- -- --
59.29 0.359 2.93 -- -- -0.343 -- -- 0.124 -- 11.99 2114 -- --
61.69 0.367 2.94 -- -- -- -- -- 0.0754 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.82 radiation 1.0 1440 < th dose independent rect. 11 1
2 49.82 radiation 1.0 1440 < th dose dependent rect. 11 1
3 53.56 precipitation 0.1 270 > th dose independent rect. 2 1
4 53.56 precipitation 0.1 270 > th dose dependent rect. 2 1
5 53.60 atmosphere 1005.0 10 < th dose dependent rect. 1 7
18 54.39 radiation 1.0 1440 < th dose independent rect. 13 2
19 54.39 radiation 1.0 1440 < th dose dependent rect. 13 2
20 54.40 radiation 1.0 1440 < th dose independent rect. 11 4
21 54.40 radiation 1.0 1440 < th dose dependent rect. 11 4
30 54.55 radiation 1.0 1440 > th dose independent rect. 13 2
51 54.68 wind 1.0 90 < th dose dependent rect. 24 1
81 54.97 wind 1.0 90 < th dose independent rect. 24 1
83 54.99 radiation 1.0 1440 > th dose independent rect. 9 6
85 55.01 radiation 1.0 1440 > th dose independent rect. 11 4
88 55.06 atmosphere 1005.0 270 < th dose dependent rect. 1 1
91 55.08 humidity 60.0 14400 > th dose independent rect. 7 1
98 55.14 atmosphere 1005.0 720 > th dose independent rect. 19 6
108 55.30 radiation 1.0 1440 > th dose independent rect. 11 1
116 55.36 radiation 1.0 1440 > th dose independent rect. 9 1
117 55.36 radiation 1.0 1440 > th dose independent rect. 9 3
118 55.37 temperature 25.0 30 > th dose dependent rect. 4 1
119 55.38 humidity 60.0 14400 > th dose independent rect. 20 12
122 55.39 temperature 25.0 10 > th dose independent rect. 4 1
131 55.48 temperature 20.0 10 > th dose independent rect. 1 5
134 55.50 wind 1.0 30 > th dose dependent rect. 4 1
137 55.52 atmosphere 1005.0 720 < th dose independent rect. 19 7
139 55.52 atmosphere 1005.0 90 < th dose dependent rect. 3 5
147 55.58 atmosphere 1005.0 720 < th dose independent rect. 21 4
151 55.60 humidity 90.0 10 < th dose independent rect. 4 1
153 55.60 humidity 60.0 14400 < th dose independent rect. 6 1
155 55.60 humidity 60.0 14400 < th dose independent rect. 20 1
157 55.60 radiation 20.0 14400 > th dose independent rect. 17 1
209 55.60 humidity 60.0 14400 < th dose dependent rect. 6 1
211 55.60 humidity 60.0 14400 < th dose dependent rect. 20 1
213 55.60 radiation 20.0 14400 > th dose dependent rect. 17 1
281 55.64 wind 1.0 270 < th dose independent rect. 3 1
282 55.64 wind 3.0 30 < th dose independent rect. 1 5
293 55.68 atmosphere 1005.0 720 < th dose independent rect. 23 2
298 55.70 humidity 60.0 14400 > th dose independent rect. 24 8
299 55.70 wind 5.0 30 < th dose dependent rect. 1 5
332 55.89 humidity 90.0 720 > th dose dependent rect. 20 1
348 55.93 atmosphere 1015.0 30 < th dose dependent rect. 1 5
376 56.01 wind 1.0 10 < th dose independent rect. 2 8
378 56.02 wind 1.0 10 < th dose independent rect. 2 2
388 56.05 temperature 30.0 10 < th dose independent rect. 6 19
392 56.07 radiation 30.0 30 < th dose independent rect. 12 1
402 56.09 wind 1.0 90 > th dose independent rect. 3 22
403 56.09 wind 5.0 270 < th dose dependent rect. 1 1
421 56.14 humidity 60.0 14400 > th dose independent rect. 4 4
425 56.14 wind 3.0 30 < th dose dependent rect. 1 9
446 56.20 radiation 40.0 1440 < th dose dependent rect. 12 1
463 56.22 atmosphere 1000.0 90 > th dose dependent rect. 11 2
465 56.22 temperature 10.0 30 > th dose dependent rect. 1 5
470 56.23 wind 1.0 10 > th dose independent rect. 3 22
471 56.23 radiation 1.0 1440 > th dose dependent rect. 12 1
476 56.25 atmosphere 1005.0 10 > th dose dependent rect. 12 1
489 56.28 atmosphere 1005.0 10 < th dose dependent sin 7 NA
520 56.33 wind 1.0 10 < th dose independent rect. 2 16
530 56.34 wind 1.0 10 < th dose independent rect. 2 14
532 56.34 wind 1.0 10 > th dose independent rect. 6 19
551 56.37 atmosphere 1015.0 270 < th dose dependent rect. 1 1
556 56.38 radiation 20.0 1440 > th dose independent rect. 12 1
571 56.40 wind 9.0 1440 < th dose independent rect. 2 5
572 56.40 temperature 10.0 1440 > th dose independent rect. 2 5
575 56.40 temperature 30.0 1440 < th dose independent rect. 2 5
579 56.40 humidity 50.0 1440 > th dose independent rect. 2 5
584 56.40 atmosphere 995.0 1440 > th dose independent rect. 2 5
585 56.40 radiation 40.0 1440 < th dose independent rect. 2 5
589 56.40 precipitation 0.1 30 < th dose independent rect. 1 5
591 56.40 temperature 10.0 1440 > th dose independent rect. 7 19
594 56.40 atmosphere 1000.0 30 > th dose independent rect. 6 19
598 56.40 precipitation 0.1 30 < th dose dependent rect. 1 5
602 56.41 radiation 20.0 1440 < th dose independent rect. 12 1
612 56.42 temperature 10.0 30 > th dose independent rect. 1 5
614 56.42 temperature 30.0 30 < th dose independent rect. 1 5
615 56.42 humidity 50.0 30 > th dose independent rect. 1 5
618 56.42 atmosphere 995.0 30 > th dose independent rect. 1 5
619 56.42 atmosphere 1010.0 30 < th dose independent rect. 1 5
621 56.42 radiation 20.0 30 < th dose independent rect. 1 5
626 56.42 temperature 10.0 30 > th dose independent rect. 6 19
628 56.42 wind 1.0 10 < th dose independent rect. 2 21
631 56.42 humidity 90.0 720 > th dose dependent rect. 20 3
634 56.43 radiation 1.0 14400 < th dose independent rect. 9 5
637 56.43 precipitation 0.1 30 < th dose independent rect. 6 19
640 56.43 humidity 50.0 30 > th dose dependent rect. 1 5
642 56.43 precipitation 0.1 30 < th dose dependent rect. 6 19
652 56.45 temperature 30.0 10 < th dose independent rect. 3 23
655 56.45 radiation 30.0 1440 < th dose dependent rect. 12 3
657 56.45 radiation 40.0 30 < th dose dependent rect. 1 5
658 56.46 atmosphere 1005.0 720 < th dose independent sin 13 NA
688 56.47 wind 1.0 270 > th dose independent rect. 17 15
693 56.47 radiation 40.0 30 < th dose dependent rect. 12 1
711 56.49 wind 1.0 10 > th dose independent rect. 2 1
716 56.49 wind 9.0 30 < th dose independent rect. 6 19
717 56.49 radiation 10.0 30 < th dose independent rect. 6 19
741 56.51 temperature 20.0 270 > th dose independent rect. 1 1
746 56.51 humidity 50.0 30 > th dose independent rect. 1 16
753 56.52 atmosphere 1005.0 720 > th dose independent sin 14 NA
777 56.52 radiation 10.0 1440 < th dose dependent rect. 12 15
780 56.53 wind 1.0 30 > th dose independent sin 3 NA
785 56.53 radiation 1.0 14400 > th dose independent rect. 9 5
786 56.53 humidity 90.0 10 < th dose dependent rect. 12 1
799 56.54 humidity 50.0 90 > th dose independent rect. 1 14
807 56.54 wind 3.0 90 < th dose dependent rect. 24 14
812 56.55 humidity 60.0 14400 > th dose independent rect. 20 2
814 56.55 atmosphere 1005.0 270 < th dose independent rect. 23 7
818 56.55 humidity 80.0 1440 > th dose dependent rect. 12 1
823 56.55 wind 9.0 30 < th dose dependent rect. 16 9
842 56.57 temperature 25.0 30 < th dose independent sin 8 NA
850 56.57 atmosphere 1000.0 30 > th dose dependent rect. 11 7
853 56.57 humidity 90.0 90 > th dose dependent rect. 24 11
858 56.58 wind 7.0 30 < th dose independent rect. 17 8
862 56.58 humidity 60.0 270 > th dose dependent rect. 1 1
868 56.58 humidity 90.0 90 > th dose dependent rect. 24 9
875 56.59 humidity 80.0 1440 > th dose independent rect. 12 1
889 56.59 humidity 90.0 720 > th dose dependent rect. 20 5
894 56.59 humidity 90.0 90 > th dose dependent rect. 24 7
909 56.60 radiation 30.0 43200 < th dose independent rect. 17 9
935 56.60 radiation 40.0 10 < th dose dependent rect. 6 19
937 56.61 atmosphere 1000.0 10 > th dose independent rect. 12 1
942 56.61 wind 1.0 270 > th dose independent rect. 3 19
944 56.61 atmosphere 1000.0 10 > th dose dependent rect. 11 4
957 56.61 radiation 10.0 10 < th dose dependent rect. 6 19
959 56.62 temperature 25.0 30 > th dose independent sin 8 NA
966 56.62 wind 1.0 10 > th dose independent rect. 3 9
967 56.62 atmosphere 1010.0 10 < th dose dependent rect. 2 1
993 56.63 temperature 25.0 30 > th dose independent rect. 18 17
995 56.63 wind 9.0 10 < th dose dependent rect. 12 1