Os03g0699600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0699600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.51 | 0.213 | 12.5 | 0.514 | 1.14 | -0.414 | 0.274 | 0.845 | 0.134 | 4.53 | 20.4 | 2534 | -- | -- |
| 21.88 | 0.218 | 12.5 | 0.381 | 1.16 | -0.55 | 0.463 | -- | 0.104 | 4.51 | 20.2 | 2590 | -- | -- |
| 20.71 | 0.212 | 12.5 | 0.521 | 1.14 | -0.414 | -- | 0.879 | 0.135 | 4.53 | 20.36 | 2536 | -- | -- |
| 22 | 0.218 | 12.5 | 0.393 | 1.15 | -0.575 | -- | -- | 0.115 | 4.48 | 19.64 | 2536 | -- | -- |
| 85.49 | 0.433 | 12.5 | 0.243 | -- | -0.444 | -- | 0.102 | 0.0693 | -- | 20.08 | 3370 | -- | -- |
| 28.27 | 0.249 | 12.5 | 0.0709 | 1.11 | -- | 0.434 | -- | -0.0423 | 4.61 | -- | -- | -- | -- |
| 28.77 | 0.251 | 12.5 | 0.0683 | 1.11 | -- | -- | -- | -0.0446 | 4.63 | -- | -- | -- | -- |
| 85.55 | 0.433 | 12.5 | 0.225 | -- | -0.45 | -- | -- | 0.0653 | -- | 20.08 | 3370 | -- | -- |
| 23.7 | 0.227 | 12.5 | -- | 1.12 | -0.44 | -- | -- | 0.0501 | 4.56 | 20.5 | 1216 | -- | -- |
| 94.48 | 0.454 | 12.5 | 0.111 | -- | -- | -- | -- | -0.0154 | -- | -- | -- | -- | -- |
| 28.89 | 0.251 | 12.5 | -- | 1.11 | -- | -- | -- | -0.0522 | 4.62 | -- | -- | -- | -- |
| 83.8 | 0.426 | 12.5 | -- | -- | -0.504 | -- | -- | 0.0648 | -- | 20.7 | 231 | -- | -- |
| 94.81 | 0.454 | 12.6 | -- | -- | -- | -- | -- | -0.0277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 10 | 20.03 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 12 |
| 13 | 20.04 | humidity | 80 | 14400 | > th | dose dependent | sin | 8 | NA |
| 30 | 20.10 | humidity | 90 | 14400 | < th | dose independent | sin | 5 | NA |
| 35 | 20.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 10 |
| 48 | 20.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 50 | 20.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 51 | 20.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 63 | 20.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 14 |
| 67 | 20.16 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 20 |
| 77 | 20.18 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 99 | 20.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 20 |
| 144 | 20.24 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 147 | 20.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 149 | 20.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 162 | 20.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 187 | 20.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 188 | 20.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 189 | 20.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 270 | 20.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 271 | 20.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 279 | 20.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 282 | 20.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 307 | 20.36 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 331 | 20.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 340 | 20.37 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 370 | 20.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 376 | 20.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 424 | 20.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 430 | 20.42 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 436 | 20.43 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 449 | 20.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 450 | 20.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 471 | 20.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 478 | 20.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 490 | 20.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 517 | 20.46 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 582 | 20.48 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 591 | 20.49 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 684 | 20.53 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 694 | 20.53 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 729 | 20.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 830 | 20.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 888 | 20.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 928 | 20.63 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 4 |