Os03g0699300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase).
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Os03g0699300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.09 | 0.402 | 11.3 | -0.372 | 1.98 | 0.89 | 0.229 | 2.21 | -0.876 | 22.1 | 41.18 | 303 | -- | -- |
| 76.2 | 0.407 | 11.3 | -0.392 | 1.94 | 0.893 | 0.105 | -- | -0.868 | 22.3 | 41.18 | 376 | -- | -- |
| 73.18 | 0.398 | 11.3 | -0.368 | 1.97 | 0.849 | -- | 1.95 | -0.868 | 22.1 | 41.71 | 324 | -- | -- |
| 75.89 | 0.406 | 11.3 | -0.452 | 1.95 | 0.861 | -- | -- | -0.902 | 22.2 | 41.18 | 376 | -- | -- |
| 219.38 | 0.69 | 11.3 | -0.3 | -- | 1.37 | -- | 1.86 | -0.988 | -- | 40.7 | 918 | -- | -- |
| 86.03 | 0.435 | 11.3 | -0.395 | 1.94 | -- | 0.0393 | -- | -0.824 | 21.6 | -- | -- | -- | -- |
| 86.03 | 0.434 | 11.3 | -0.397 | 1.94 | -- | -- | -- | -0.824 | 21.6 | -- | -- | -- | -- |
| 212.78 | 0.679 | 11.3 | -0.57 | -- | 1.42 | -- | -- | -1.13 | -- | 40.7 | 919 | -- | -- |
| 81.09 | 0.419 | 11.3 | -- | 1.94 | 0.791 | -- | -- | -0.854 | 22.2 | 41.72 | 369 | -- | -- |
| 308.11 | 0.82 | 11.3 | -0.382 | -- | -- | -- | -- | -0.829 | -- | -- | -- | -- | -- |
| 90.18 | 0.444 | 11.3 | -- | 1.94 | -- | -- | -- | -0.78 | 21.5 | -- | -- | -- | -- |
| 218.23 | 0.688 | 11.3 | -- | -- | 1.63 | -- | -- | -1.03 | -- | 37.2 | 917 | -- | -- |
| 311.96 | 0.824 | 11.3 | -- | -- | -- | -- | -- | -0.786 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.36 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 2 | 71.40 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 6 | 71.99 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 23 |
| 43 | 73.32 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 44 | 73.33 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 45 | 73.40 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 20 |
| 49 | 73.47 | radiation | 40 | 270 | > th | dose independent | rect. | 13 | 23 |
| 53 | 73.58 | radiation | 40 | 270 | < th | dose independent | sin | 4 | NA |
| 58 | 73.67 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 18 |
| 59 | 73.70 | radiation | 40 | 270 | > th | dose independent | sin | 3 | NA |
| 63 | 73.75 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 66 | 73.77 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 6 |
| 86 | 73.78 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |
| 240 | 73.81 | radiation | 40 | 270 | < th | dose independent | no | NA | NA |
| 241 | 73.82 | radiation | 30 | 270 | > th | dose dependent | sin | 2 | NA |
| 242 | 73.82 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 280 | 73.85 | radiation | 30 | 270 | > th | dose dependent | no | NA | NA |
| 404 | 73.87 | radiation | 30 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 412 | 73.95 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 473 | 74.20 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 480 | 74.26 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 10 | 6 |
| 519 | 74.39 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 584 | 74.63 | temperature | 30 | 30 | < th | dose independent | rect. | 7 | 23 |
| 696 | 74.64 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 709 | 74.68 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 6 | 16 |
| 929 | 74.80 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 995 | 74.99 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 10 | 6 |