Os03g0698400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0698400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.28 | 0.227 | 8.66 | -0.151 | 0.41 | -0.3 | -0.0167 | 0.82 | 0.0805 | 4.43 | 20 | 4122 | -- | -- |
| 23.75 | 0.227 | 8.69 | -0.364 | 0.407 | -0.427 | 0.109 | -- | 0.032 | 4.1 | 19.99 | 1922 | -- | -- |
| 23.28 | 0.225 | 8.66 | -0.151 | 0.41 | -0.301 | -- | 0.819 | 0.0806 | 4.44 | 20 | 4119 | -- | -- |
| 23.45 | 0.226 | 8.7 | -0.331 | 0.4 | -0.526 | -- | -- | 0.0301 | 4.41 | 19.3 | 1851 | -- | -- |
| 30.97 | 0.261 | 8.71 | -0.39 | -- | -0.299 | -- | 0.383 | 0.00986 | -- | 20 | 4119 | -- | -- |
| 27.88 | 0.248 | 8.72 | -0.553 | 0.396 | -- | 0.0775 | -- | -0.0725 | 4.53 | -- | -- | -- | -- |
| 27.89 | 0.247 | 8.72 | -0.553 | 0.396 | -- | -- | -- | -0.0729 | 4.49 | -- | -- | -- | -- |
| 31.67 | 0.262 | 8.7 | -0.328 | -- | -0.562 | -- | -- | 0.0341 | -- | 19.4 | 1809 | -- | -- |
| 24.36 | 0.23 | 8.68 | -- | 0.4 | -0.617 | -- | -- | 0.111 | 4.43 | 19 | 14283 | -- | -- |
| 36.28 | 0.281 | 8.73 | -0.538 | -- | -- | -- | -- | -0.0625 | -- | -- | -- | -- | -- |
| 35.96 | 0.28 | 8.71 | -- | 0.386 | -- | -- | -- | -0.0113 | 4.52 | -- | -- | -- | -- |
| 32.61 | 0.266 | 8.69 | -- | -- | -0.614 | -- | -- | 0.105 | -- | 17.8 | 21995 | -- | -- |
| 43.91 | 0.309 | 8.71 | -- | -- | -- | -- | -- | -0.00281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.71 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 9 | 22.24 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 21 |
| 15 | 22.41 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 22 |
| 18 | 22.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 19 | 22.47 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 1 |
| 20 | 22.47 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 28 | 22.54 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 3 |
| 57 | 22.84 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 21 |
| 61 | 22.85 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 14 |
| 64 | 22.87 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 67 | 22.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 68 | 22.88 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 89 | 22.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 125 | 23.01 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 20 |
| 141 | 23.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 20 |
| 142 | 23.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 15 |
| 162 | 23.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 163 | 23.07 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 10 |
| 167 | 23.07 | humidity | 90 | 14400 | > th | dose dependent | sin | 1 | NA |
| 177 | 23.09 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 13 |
| 199 | 23.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 200 | 23.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 202 | 23.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 204 | 23.12 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 216 | 23.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 232 | 23.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 14 |
| 240 | 23.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 250 | 23.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 21 |
| 256 | 23.17 | humidity | 90 | 14400 | > th | dose independent | sin | 18 | NA |
| 272 | 23.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 296 | 23.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 304 | 23.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 307 | 23.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 7 | 17 |
| 330 | 23.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 347 | 23.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 360 | 23.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 15 |
| 377 | 23.21 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 380 | 23.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 382 | 23.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 394 | 23.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 7 | 17 |
| 415 | 23.23 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 417 | 23.23 | humidity | 90 | 14400 | < th | dose independent | sin | 18 | NA |
| 434 | 23.23 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 451 | 23.24 | humidity | 90 | 14400 | > th | dose independent | sin | 2 | NA |
| 452 | 23.24 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 453 | 23.24 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 499 | 23.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 504 | 23.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 505 | 23.25 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 532 | 23.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 536 | 23.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 544 | 23.26 | humidity | 90 | 14400 | < th | dose independent | sin | 2 | NA |
| 590 | 23.26 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 21 |
| 597 | 23.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 602 | 23.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 603 | 23.26 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 614 | 23.27 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 619 | 23.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 654 | 23.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 672 | 23.28 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 718 | 23.28 | humidity | 80 | 14400 | > th | dose dependent | sin | 18 | NA |
| 724 | 23.29 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 728 | 23.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 729 | 23.29 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 773 | 23.29 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 831 | 23.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 20 |
| 836 | 23.31 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 868 | 23.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 925 | 23.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 935 | 23.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 941 | 23.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 962 | 23.33 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 967 | 23.33 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 7 |