Os03g0694800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L18P/L5E family protein.
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Os03g0694800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L18P/L5E family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.52 | 0.299 | 9.01 | 0.421 | 0.941 | -0.982 | -0.961 | 0.249 | -0.214 | 19.6 | 28.8 | 101 | -- | -- |
| 40.59 | 0.297 | 9 | 0.463 | 0.937 | -0.98 | -0.971 | -- | -0.202 | 19.6 | 28.57 | 112 | -- | -- |
| 43.11 | 0.306 | 9.01 | 0.429 | 0.942 | -0.98 | -- | 0.297 | -0.215 | 19.6 | 28.74 | 104 | -- | -- |
| 43.14 | 0.306 | 9 | 0.484 | 0.931 | -0.983 | -- | -- | -0.208 | 19.6 | 28.16 | 126 | -- | -- |
| 75.25 | 0.404 | 9.03 | 0.158 | -- | -1.56 | -- | 1.02 | -0.371 | -- | 30.18 | 405 | -- | -- |
| 54.14 | 0.345 | 8.96 | 0.719 | 1.09 | -- | -0.949 | -- | 0.00281 | 18.6 | -- | -- | -- | -- |
| 56.41 | 0.352 | 8.96 | 0.734 | 1.08 | -- | -- | -- | 0.000147 | 18.6 | -- | -- | -- | -- |
| 75.76 | 0.405 | 9.01 | 0.329 | -- | -1.56 | -- | -- | -0.29 | -- | 30.1 | 405 | -- | -- |
| 48.64 | 0.325 | 9.02 | -- | 0.904 | -1.2 | -- | -- | -0.3 | 19.8 | 28.14 | 132 | -- | -- |
| 117.46 | 0.506 | 8.94 | 0.708 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 70.61 | 0.393 | 8.98 | -- | 1.07 | -- | -- | -- | -0.0816 | 18.7 | -- | -- | -- | -- |
| 78.34 | 0.412 | 9.02 | -- | -- | -1.68 | -- | -- | -0.381 | -- | 29.9 | 414 | -- | -- |
| 130.68 | 0.534 | 8.95 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 20 |
| 3 | 40.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 9 | 40.38 | temperature | 25 | 90 | < th | dose dependent | sin | 23 | NA |
| 10 | 40.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 13 | 40.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 17 | 40.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 20 | 40.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 23 |
| 23 | 40.88 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 24 | 40.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 41.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 42 | 41.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 102 | 41.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 201 | 42.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 207 | 42.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 226 | 42.49 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 235 | 42.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 260 | 42.67 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 292 | 42.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 319 | 42.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 326 | 42.95 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 399 | 43.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 417 | 43.29 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 446 | 43.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 470 | 43.44 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 18 |
| 499 | 43.50 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 500 | 43.50 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 517 | 43.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 546 | 43.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 590 | 43.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 595 | 43.75 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 20 |
| 641 | 43.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 667 | 43.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 693 | 43.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 699 | 43.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 866 | 44.26 | temperature | 25 | 90 | < th | dose independent | sin | 22 | NA |
| 877 | 44.27 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 897 | 44.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |