Os03g0694700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0694700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.33 | 0.263 | 11 | -0.277 | 0.647 | -0.818 | -0.383 | 0.308 | -0.268 | 0.0762 | 28.71 | 344 | -- | -- |
| 30.9 | 0.259 | 11 | -0.231 | 0.645 | -0.778 | -0.303 | -- | -0.277 | 0.188 | 28.3 | 372 | -- | -- |
| 31.55 | 0.262 | 11 | -0.288 | 0.65 | -0.819 | -- | 0.38 | -0.291 | 0.176 | 28.44 | 367 | -- | -- |
| 31.24 | 0.26 | 11 | -0.208 | 0.663 | -0.722 | -- | -- | -0.281 | 0.196 | 27.8 | 348 | -- | -- |
| 50.27 | 0.33 | 11 | -0.317 | -- | -0.893 | -- | 0.518 | -0.289 | -- | 28.5 | 641 | -- | -- |
| 48.83 | 0.328 | 11 | -0.0811 | 0.686 | -- | -0.0597 | -- | -0.177 | 21.4 | -- | -- | -- | -- |
| 48.84 | 0.327 | 11 | -0.0788 | 0.686 | -- | -- | -- | -0.177 | 21.3 | -- | -- | -- | -- |
| 49.95 | 0.329 | 11 | -0.238 | -- | -0.817 | -- | -- | -0.268 | -- | 27.78 | 624 | -- | -- |
| 32.74 | 0.266 | 11 | -- | 0.645 | -0.72 | -- | -- | -0.256 | 0.143 | 27.9 | 347 | -- | -- |
| 76.37 | 0.408 | 11 | -0.0754 | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
| 49.01 | 0.327 | 11 | -- | 0.686 | -- | -- | -- | -0.168 | 21.3 | -- | -- | -- | -- |
| 51.51 | 0.334 | 11 | -- | -- | -0.827 | -- | -- | -0.236 | -- | 28.44 | 614 | -- | -- |
| 76.52 | 0.408 | 11 | -- | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 3 | 30.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 39 | 31.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 44 | 31.30 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 67 | 31.77 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 70 | 31.79 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 84 | 31.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 92 | 32.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 138 | 32.22 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 143 | 32.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 180 | 32.41 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 199 | 32.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 218 | 32.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 230 | 32.61 | temperature | 25 | 90 | > th | dose dependent | sin | 20 | NA |
| 270 | 32.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 281 | 32.80 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 289 | 32.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 301 | 32.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 746 | 34.28 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 785 | 34.36 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 821 | 34.42 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 19 |