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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0694600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.88 (0.0419) R2 : 0.628
β1 : 2.58 (0.171) R2dD : 0.407 R2D : 0.212
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.74 (0.196) R2dE : 0.227 R2E : 0.263
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.9 (0.592) R2dD*E : 0.159 R2D*E : -0.588
γ1 : 0.97 (0.0833) R2dN8 : 0.218 R2N8 : 0.0944
σ : 0.6
deviance : 165.87
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.03
memory length : 6530
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.96 0.581 4.89 2.58 0.387 1.74 1.39 3.86 0.968 17.4 20.06 6535 -- --
171.76 0.61 5.06 1.78 0.399 0.986 0.913 -- 0.765 17.2 19.4 31326 -- --
157.69 0.585 4.89 2.58 0.398 1.75 -- 3.91 0.971 17.5 20.1 6602 -- --
173.43 0.613 5.09 1.76 0.391 0.909 -- -- 0.712 17.6 22 27467 -- --
165.87 0.6 4.88 2.58 -- 1.74 -- 3.9 0.97 -- 20.03 6530 -- --
181.72 0.632 5 2.76 0.386 -- 1.45 -- 1.12 17.8 -- -- -- --
186.83 0.64 4.99 2.75 0.395 -- -- -- 1.13 18 -- -- -- --
181.84 0.628 5.08 1.79 -- 0.876 -- -- 0.727 -- 22 27674 -- --
189.29 0.641 5.2 -- 0.368 2.06 -- -- 0.25 18.3 19.4 47520 -- --
194.92 0.652 4.99 2.74 -- -- -- -- 1.12 -- -- -- -- --
386.73 0.92 5.06 -- 0.356 -- -- -- 0.818 18.4 -- -- -- --
197.02 0.654 5.19 -- -- 2.15 -- -- 0.231 -- 19.4 47520 -- --
393.31 0.926 5.06 -- -- -- -- -- 0.812 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.24 humidity 60 43200 > th dose independent rect. 9 1
2 147.94 humidity 60 43200 > th dose independent rect. 8 3
4 148.33 humidity 60 43200 > th dose independent rect. 1 10
6 148.35 humidity 60 43200 < th dose independent rect. 9 2
10 148.39 humidity 60 43200 > th dose independent rect. 5 6
18 149.32 humidity 60 43200 < th dose independent rect. 24 11
41 149.87 wind 1 43200 < th dose dependent rect. 17 13
64 151.01 wind 1 43200 < th dose dependent rect. 4 3
67 151.14 humidity 70 43200 < th dose dependent rect. 2 8
72 151.21 humidity 70 43200 < th dose dependent rect. 7 3
75 151.24 wind 1 43200 < th dose dependent rect. 23 7
81 151.60 wind 1 43200 < th dose independent rect. 18 12
82 151.68 wind 1 43200 < th dose independent rect. 20 10
87 151.85 wind 1 43200 < th dose independent rect. 22 8
88 151.87 wind 1 43200 < th dose dependent rect. 20 10
125 153.43 humidity 60 43200 < th dose dependent sin 4 NA
132 153.54 humidity 60 43200 < th dose dependent rect. 10 2
148 153.73 humidity 60 43200 < th dose dependent rect. 9 7
153 153.80 humidity 60 43200 < th dose independent sin 9 NA
159 153.81 wind 1 43200 < th dose dependent rect. 2 7
175 154.02 humidity 60 43200 < th dose dependent rect. 17 19
203 154.34 humidity 60 43200 < th dose dependent rect. 14 23
218 154.40 radiation 10 43200 < th dose dependent rect. 17 2
223 154.41 radiation 10 43200 < th dose dependent rect. 17 9
224 154.42 radiation 40 43200 < th dose dependent rect. 17 2
281 154.55 wind 1 43200 < th dose dependent sin 12 NA
291 154.60 wind 1 43200 > th dose independent rect. 18 12
307 154.67 wind 1 43200 > th dose independent rect. 22 8
343 154.90 temperature 20 4320 < th dose independent sin 19 NA
350 154.96 radiation 20 43200 > th dose independent rect. 16 15
351 154.99 radiation 30 43200 > th dose dependent rect. 15 2
367 155.00 wind 1 43200 > th dose independent rect. 20 10
370 155.01 temperature 20 14400 < th dose dependent rect. 23 1
387 155.05 temperature 20 4320 < th dose independent rect. 10 14
395 155.07 radiation 20 43200 > th dose independent rect. 15 3
433 155.13 temperature 20 4320 < th dose independent rect. 6 18
436 155.14 wind 1 43200 < th dose dependent rect. 12 1
463 155.25 temperature 20 270 > th dose dependent rect. 21 20
465 155.26 wind 1 43200 < th dose independent rect. 22 1
511 155.35 temperature 25 1440 < th dose dependent rect. 19 17
517 155.35 humidity 60 43200 < th dose dependent rect. 8 23
520 155.36 humidity 60 43200 < th dose dependent no NA NA
532 155.36 humidity 60 43200 < th dose dependent rect. 8 19
540 155.36 humidity 60 43200 < th dose dependent rect. 6 21
616 155.53 temperature 20 4320 > th dose independent rect. 6 18
640 155.67 wind 1 14400 < th dose dependent rect. 1 3
641 155.67 radiation 40 43200 > th dose dependent rect. 14 18
650 155.74 humidity 50 43200 > th dose independent rect. 15 1
685 155.78 temperature 15 270 > th dose dependent rect. 20 22
726 155.86 temperature 20 4320 > th dose independent sin 19 NA
743 155.92 temperature 25 1440 < th dose dependent rect. 19 6
751 155.95 temperature 25 1440 < th dose dependent sin 9 NA
763 155.98 temperature 25 1440 < th dose dependent rect. 18 11
789 156.05 wind 1 43200 > th dose independent rect. 4 4
825 156.10 humidity 50 43200 < th dose independent rect. 15 1
870 156.18 temperature 25 1440 < th dose dependent rect. 21 1
921 156.26 temperature 20 4320 < th dose independent rect. 20 3
958 156.34 temperature 25 1440 < th dose dependent rect. 7 23
975 156.38 wind 1 43200 < th dose independent rect. 4 4
996 156.44 humidity 60 43200 > th dose independent sin 10 NA
999 156.44 temperature 25 1440 < th dose dependent no NA NA