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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0691500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0474) R2 : 0.0272
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.356 (0.0997) R2dN8 : 0.0352 R2N8 : 0.0272
σ : 0.892
deviance : 365.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.29 0.864 3.13 0.607 0.195 -0.68 0.412 -4.01 -0.438 11.1 10 4320 -- --
349.92 0.871 3.02 0.484 0.15 -0.465 0.327 -- -0.364 10.9 20.26 4400 -- --
338.67 0.857 3.13 0.597 0.19 -0.665 -- -4.02 -0.437 10.3 9.991 4404 -- --
349.76 0.871 3.02 0.431 0.182 -0.571 -- -- -0.382 9.51 20.12 4383 -- --
340.36 0.859 3.13 0.619 -- -0.673 -- -3.99 -0.434 -- 9.961 4427 -- --
357.04 0.886 3.02 0.463 0.178 -- 0.277 -- -0.304 10.3 -- -- -- --
357.27 0.885 3.02 0.472 0.184 -- -- -- -0.304 9.49 -- -- -- --
351.29 0.873 3.04 0.4 -- -0.606 -- -- -0.392 -- 20.11 4475 -- --
354.55 0.877 3.02 -- 0.178 -0.616 -- -- -0.386 9.56 20 4383 -- --
359.26 0.886 3.02 0.471 -- -- -- -- -0.304 -- -- -- -- --
363.15 0.891 3.03 -- 0.183 -- -- -- -0.357 9.3 -- -- -- --
356 0.879 3.04 -- -- -0.583 -- -- -0.399 -- 20 4480 -- --
365.11 0.892 3.03 -- -- -- -- -- -0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 322.81 wind 5 90 > th dose dependent rect. 6 3
8 325.85 wind 7 90 > th dose independent rect. 7 2
12 325.86 wind 7 90 > th dose independent rect. 3 6
24 327.14 radiation 20 270 > th dose dependent rect. 6 1
42 328.35 radiation 20 270 > th dose independent rect. 6 1
58 333.14 wind 9 14400 > th dose independent rect. 15 2
64 333.70 wind 9 4320 < th dose independent rect. 6 1
66 333.97 wind 9 14400 < th dose independent rect. 15 2
67 334.07 temperature 30 90 > th dose independent rect. 10 4
69 334.30 atmosphere 1010 90 < th dose dependent rect. 5 1
70 334.42 wind 9 14400 > th dose dependent rect. 15 2
72 334.64 temperature 30 270 > th dose independent rect. 10 2
78 335.17 radiation 20 4320 < th dose independent rect. 10 2
86 335.39 atmosphere 1000 10 < th dose independent rect. 5 1
94 335.39 atmosphere 1000 10 < th dose dependent rect. 5 1
116 335.83 wind 9 14400 > th dose independent rect. 11 6
126 336.08 temperature 10 1440 > th dose independent rect. 6 1
129 336.08 temperature 30 1440 < th dose independent rect. 6 1
133 336.08 humidity 50 1440 > th dose independent rect. 6 1
138 336.08 atmosphere 995 1440 > th dose independent rect. 6 1
139 336.08 atmosphere 1015 1440 < th dose independent rect. 6 1
140 336.08 radiation 40 1440 < th dose independent rect. 6 1
144 336.08 temperature 10 1440 > th dose independent rect. 7 23
148 336.13 temperature 30 14400 > th dose dependent rect. 8 1
164 336.20 wind 9 14400 < th dose independent rect. 11 6
178 336.54 wind 1 14400 < th dose dependent rect. 9 5
179 336.57 wind 9 14400 < th dose independent rect. 9 8
185 336.70 wind 9 14400 > th dose dependent rect. 9 8
189 336.75 wind 9 14400 > th dose dependent rect. 11 6
194 336.84 wind 1 30 < th dose dependent rect. 5 1
195 336.88 wind 9 14400 > th dose dependent rect. 11 2
196 336.89 temperature 30 14400 > th dose independent rect. 8 1
225 337.17 wind 9 14400 > th dose independent rect. 1 16
232 337.30 wind 9 14400 > th dose independent sin 0 NA
234 337.31 atmosphere 1015 720 < th dose dependent rect. 19 11
253 337.41 radiation 10 4320 < th dose independent rect. 6 9
254 337.42 radiation 10 4320 < th dose independent rect. 7 7
261 337.46 radiation 10 4320 < th dose independent rect. 10 23
269 337.48 atmosphere 1015 720 < th dose dependent rect. 21 9
286 337.55 wind 9 14400 > th dose independent rect. 21 20
292 337.58 radiation 10 4320 < th dose independent rect. 3 12
303 337.59 radiation 10 4320 < th dose independent rect. 20 19
327 337.66 wind 9 14400 < th dose independent rect. 11 3
348 337.73 wind 9 14400 > th dose dependent sin 1 NA
371 337.78 radiation 10 4320 < th dose independent sin 2 NA
390 337.86 wind 9 14400 < th dose independent rect. 24 17
392 337.86 temperature 30 90 > th dose dependent rect. 11 2
395 337.87 temperature 30 14400 < th dose independent rect. 24 9
406 337.90 temperature 30 14400 < th dose independent rect. 3 6
419 337.92 temperature 30 14400 < th dose independent rect. 22 11
421 337.93 wind 9 14400 > th dose independent rect. 12 1
426 337.94 temperature 30 14400 < th dose independent rect. 20 13
439 337.99 wind 9 14400 > th dose dependent rect. 1 16
492 338.16 wind 1 14400 < th dose dependent rect. 22 1
500 338.18 radiation 10 4320 < th dose independent rect. 6 23
515 338.23 wind 9 14400 < th dose independent rect. 21 20
516 338.23 atmosphere 995 720 > th dose dependent rect. 22 7
534 338.27 radiation 10 4320 < th dose independent rect. 13 23
563 338.29 radiation 10 4320 < th dose independent no NA NA
602 338.32 wind 9 14400 > th dose dependent rect. 21 20
609 338.35 atmosphere 995 270 > th dose dependent rect. 23 14
631 338.41 atmosphere 1015 270 < th dose dependent sin 7 NA
641 338.45 wind 9 14400 < th dose independent sin 1 NA
670 338.51 wind 1 14400 < th dose dependent rect. 11 3
674 338.54 radiation 20 4320 < th dose dependent rect. 10 2
709 338.65 atmosphere 995 270 > th dose dependent rect. 23 12
767 338.86 atmosphere 995 270 > th dose dependent sin 7 NA
774 338.87 temperature 25 30 > th dose dependent rect. 5 1
787 338.92 atmosphere 1000 270 > th dose dependent rect. 23 16
889 339.27 temperature 25 270 > th dose dependent rect. 18 19
898 339.31 wind 1 14400 < th dose independent rect. 22 1
907 339.36 atmosphere 1015 270 < th dose dependent rect. 1 12
948 339.48 atmosphere 1015 720 < th dose dependent sin 10 NA
973 339.50 atmosphere 1015 90 < th dose dependent rect. 4 11
992 339.59 radiation 20 4320 < th dose dependent rect. 3 12
1000 339.60 radiation 20 4320 < th dose dependent rect. 20 19