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Os03g0690600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SCARECROW-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.48 (0.0154) R2 : 0.676
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.24 (0.0404) R2dC : 0.678 R2C : 0.675
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0111 (0.0324) R2dN8 : 0.000108 R2N8 : -0.00255
σ : 0.291
deviance : 38.65
__
_____
C
peak time of C : 6.07
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.88 0.261 8.39 0.966 1.22 -0.137 -0.101 2.91 0.132 6.16 29.95 1258 -- --
32.2 0.264 8.46 0.398 1.24 0.168 -0.0679 -- 0.0959 6.11 33.7 4740 -- --
30.9 0.259 8.39 0.964 1.22 -0.136 -- 2.9 0.132 6.16 29.95 1257 -- --
32.14 0.264 8.46 0.382 1.23 0.176 -- -- 0.0942 6.14 33.41 5453 -- --
107.39 0.483 8.4 1.1 -- -0.154 -- 3.53 0.168 -- 30.09 1345 -- --
33.64 0.272 8.47 0.436 1.24 -- -0.0656 -- 0.0593 6.09 -- -- -- --
33.65 0.272 8.47 0.435 1.24 -- -- -- 0.0596 6.09 -- -- -- --
109.14 0.489 8.49 0.501 -- -0.334 -- -- 0.0761 -- 30.09 1345 -- --
35.78 0.279 8.46 -- 1.24 0.237 -- -- 0.0663 6.13 32.9 5441 -- --
113.18 0.497 8.49 0.471 -- -- -- -- 0.0874 -- -- -- -- --
38.65 0.291 8.48 -- 1.24 -- -- -- 0.0111 6.07 -- -- -- --
113.6 0.496 8.49 -- -- 0.303 -- -- 0.0973 -- 32 5627 -- --
119.02 0.509 8.5 -- -- -- -- -- 0.0352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.76 temperature 25.0 90 < th dose independent rect. 3 4
2 28.84 atmosphere 1015.0 270 < th dose dependent rect. 1 5
3 28.97 temperature 25.0 270 < th dose independent rect. 1 5
4 29.00 temperature 30.0 270 < th dose dependent rect. 1 5
6 29.04 wind 7.0 90 < th dose dependent rect. 3 3
9 29.07 atmosphere 1015.0 270 < th dose dependent rect. 2 3
10 29.08 wind 3.0 90 < th dose independent rect. 3 3
18 29.23 precipitation 0.1 90 < th dose independent rect. 3 3
19 29.23 precipitation 0.1 90 < th dose dependent rect. 3 3
21 29.25 wind 5.0 90 < th dose dependent rect. 3 5
22 29.28 humidity 80.0 90 > th dose independent rect. 3 3
25 29.29 temperature 30.0 270 < th dose dependent rect. 3 2
28 29.30 atmosphere 1000.0 90 > th dose independent rect. 23 4
31 29.32 wind 5.0 270 < th dose independent rect. 1 5
36 29.34 temperature 10.0 90 > th dose independent rect. 3 3
39 29.34 humidity 50.0 90 > th dose independent rect. 3 3
42 29.34 atmosphere 995.0 90 > th dose independent rect. 3 3
43 29.34 atmosphere 1010.0 90 < th dose independent rect. 3 3
45 29.34 radiation 20.0 90 < th dose independent rect. 3 3
48 29.34 temperature 10.0 90 > th dose independent rect. 6 21
51 29.36 temperature 30.0 90 < th dose dependent rect. 3 5
53 29.37 humidity 50.0 30 > th dose independent rect. 6 21
61 29.40 humidity 50.0 90 > th dose dependent rect. 3 3
66 29.43 precipitation 0.1 270 < th dose independent rect. 24 23
67 29.43 wind 9.0 270 < th dose dependent rect. 1 5
69 29.43 precipitation 0.1 270 < th dose dependent rect. 24 23
71 29.44 radiation 40.0 90 < th dose dependent rect. 3 3
72 29.45 humidity 50.0 270 > th dose independent rect. 6 19
73 29.45 temperature 15.0 90 > th dose independent rect. 3 20
75 29.45 atmosphere 1015.0 10 < th dose dependent rect. 4 2
79 29.46 atmosphere 995.0 90 > th dose dependent rect. 23 4
82 29.47 precipitation 0.1 270 < th dose independent rect. 1 5
84 29.47 precipitation 0.1 270 < th dose dependent rect. 1 5
85 29.48 wind 9.0 90 < th dose independent rect. 6 21
90 29.50 wind 9.0 4320 < th dose independent rect. 4 3
91 29.50 atmosphere 995.0 90 > th dose independent rect. 6 21
99 29.53 wind 5.0 90 < th dose dependent rect. 3 8
100 29.54 precipitation 0.1 90 < th dose independent rect. 3 20
103 29.54 precipitation 0.1 90 < th dose dependent rect. 3 20
105 29.55 wind 3.0 90 < th dose independent rect. 3 5
117 29.58 precipitation 0.1 90 < th dose independent rect. 6 21
123 29.58 precipitation 0.1 90 < th dose dependent rect. 6 21
124 29.59 atmosphere 1000.0 270 > th dose independent rect. 23 1
126 29.59 temperature 10.0 1440 > th dose independent rect. 4 3
129 29.59 temperature 30.0 1440 < th dose independent rect. 4 3
133 29.59 humidity 50.0 1440 > th dose independent rect. 4 3
138 29.59 atmosphere 995.0 1440 > th dose independent rect. 4 3
139 29.59 atmosphere 1015.0 1440 < th dose independent rect. 4 3
140 29.59 radiation 40.0 1440 < th dose independent rect. 4 3
145 29.59 temperature 10.0 1440 > th dose independent rect. 7 21
153 29.60 temperature 10.0 270 > th dose independent rect. 1 5
156 29.60 humidity 50.0 270 > th dose independent rect. 1 5
159 29.60 atmosphere 995.0 270 > th dose independent rect. 1 5
160 29.60 atmosphere 1015.0 270 < th dose independent rect. 1 5
161 29.60 radiation 20.0 270 < th dose independent rect. 1 5
164 29.60 temperature 10.0 270 > th dose independent rect. 6 19
186 29.63 humidity 50.0 30 > th dose independent rect. 8 19
194 29.66 precipitation 0.1 90 < th dose independent rect. 3 16
199 29.66 precipitation 0.1 90 < th dose dependent rect. 3 16
201 29.67 precipitation 0.1 90 < th dose independent rect. 3 18
203 29.67 precipitation 0.1 90 < th dose dependent rect. 3 18
222 29.69 temperature 15.0 270 > th dose independent rect. 1 20
227 29.70 radiation 40.0 270 < th dose dependent rect. 1 5
236 29.72 precipitation 0.1 10 < th dose independent rect. 3 5
243 29.72 precipitation 0.1 10 < th dose dependent rect. 3 5
247 29.73 precipitation 0.1 270 < th dose independent rect. 6 19
253 29.73 precipitation 0.1 270 < th dose dependent rect. 6 19
256 29.74 precipitation 0.1 270 < th dose independent rect. 1 20
257 29.74 temperature 30.0 10 < th dose dependent rect. 4 2
260 29.74 precipitation 0.1 270 < th dose dependent rect. 1 20
261 29.75 atmosphere 1010.0 90 < th dose independent rect. 3 5
264 29.75 wind 9.0 90 < th dose dependent rect. 19 8
265 29.75 wind 5.0 30 < th dose dependent rect. 3 10
268 29.76 atmosphere 1000.0 270 > th dose independent rect. 21 4
269 29.76 humidity 50.0 270 > th dose dependent rect. 1 5
271 29.77 temperature 10.0 30 > th dose dependent rect. 3 3
290 29.79 atmosphere 995.0 270 > th dose independent rect. 6 19
293 29.79 atmosphere 995.0 270 > th dose dependent rect. 23 1
329 29.82 wind 9.0 4320 < th dose independent rect. 4 5
330 29.82 wind 9.0 270 < th dose independent rect. 6 19
337 29.83 temperature 15.0 90 > th dose independent rect. 3 18
339 29.83 radiation 40.0 90 < th dose dependent rect. 3 5
340 29.83 radiation 1.0 270 < th dose dependent rect. 1 6
343 29.84 temperature 10.0 90 > th dose independent rect. 3 5
346 29.84 humidity 50.0 90 > th dose independent rect. 3 5
348 29.84 atmosphere 995.0 90 > th dose independent rect. 3 5
351 29.84 temperature 10.0 90 > th dose independent rect. 8 19
360 29.85 humidity 80.0 90 > th dose independent rect. 23 4
392 29.86 wind 9.0 90 < th dose dependent rect. 3 16
396 29.87 atmosphere 1000.0 90 > th dose independent rect. 21 6
404 29.88 radiation 40.0 90 < th dose independent rect. 3 5
405 29.88 temperature 15.0 90 > th dose independent rect. 3 16
407 29.88 atmosphere 1015.0 90 < th dose independent rect. 6 21
416 29.89 precipitation 0.1 10 < th dose independent rect. 8 19
423 29.89 precipitation 0.1 10 < th dose dependent rect. 8 19
424 29.90 humidity 80.0 270 > th dose independent rect. 23 1
427 29.90 wind 9.0 90 < th dose independent rect. 23 4
428 29.90 temperature 10.0 90 > th dose independent rect. 23 4
429 29.90 temperature 30.0 90 < th dose independent rect. 23 4
430 29.90 humidity 50.0 90 > th dose independent rect. 23 4
435 29.90 radiation 1.0 90 < th dose independent rect. 23 4
440 29.90 precipitation 0.1 90 < th dose independent rect. 23 4
452 29.90 wind 9.0 270 < th dose dependent rect. 23 1
456 29.90 humidity 50.0 90 > th dose dependent rect. 23 4
457 29.90 radiation 1.0 90 < th dose dependent rect. 23 4
462 29.90 precipitation 0.1 90 < th dose dependent rect. 23 4
466 29.90 humidity 50.0 30 > th dose dependent rect. 6 21
468 29.91 radiation 1.0 270 < th dose independent rect. 1 6
469 29.91 wind 9.0 30 < th dose independent rect. 8 19
473 29.91 wind 9.0 90 < th dose dependent rect. 23 4
497 29.92 wind 7.0 10 < th dose dependent rect. 23 4
499 29.92 humidity 50.0 30 > th dose dependent rect. 8 19
516 29.93 humidity 70.0 90 > th dose independent rect. 19 8
528 29.93 wind 9.0 90 < th dose dependent rect. 21 6
533 29.94 atmosphere 995.0 30 > th dose independent rect. 8 19
546 29.95 temperature 10.0 1440 > th dose independent rect. 4 5
549 29.95 humidity 50.0 1440 > th dose independent rect. 4 5
551 29.95 atmosphere 995.0 1440 > th dose independent rect. 4 5
552 29.95 atmosphere 1015.0 1440 < th dose independent rect. 4 5
553 29.95 humidity 50.0 270 > th dose independent rect. 6 8
555 29.95 temperature 10.0 1440 > th dose independent rect. 9 19
568 29.96 temperature 15.0 270 > th dose independent rect. 14 16
569 29.96 wind 9.0 90 < th dose independent rect. 3 20
570 29.96 atmosphere 1015.0 90 < th dose independent rect. 3 20
574 29.96 humidity 50.0 90 > th dose dependent rect. 3 5
584 29.97 wind 3.0 30 < th dose independent rect. 3 8
587 29.97 atmosphere 1000.0 270 > th dose independent rect. 21 14
602 29.98 temperature 10.0 90 > th dose dependent rect. 23 4
605 29.98 humidity 50.0 90 > th dose dependent rect. 19 8
621 30.00 temperature 15.0 270 > th dose independent rect. 24 23
623 30.00 atmosphere 995.0 30 > th dose dependent rect. 3 3
651 30.02 temperature 10.0 270 > th dose dependent rect. 12 9
653 30.03 wind 5.0 270 < th dose independent rect. 23 1
661 30.03 wind 9.0 30 < th dose dependent rect. 3 20
663 30.04 temperature 10.0 270 > th dose independent rect. 23 1
664 30.04 temperature 30.0 270 < th dose independent rect. 23 1
665 30.04 humidity 50.0 270 > th dose independent rect. 23 1
669 30.04 radiation 1.0 270 < th dose independent rect. 23 1
674 30.04 precipitation 0.1 270 < th dose independent rect. 23 1
678 30.04 precipitation 0.1 270 < th dose independent rect. 15 15
685 30.04 radiation 1.0 270 < th dose dependent rect. 23 1
690 30.04 precipitation 0.1 270 < th dose dependent rect. 23 1
694 30.04 humidity 50.0 90 > th dose dependent rect. 21 6
695 30.04 precipitation 0.1 270 < th dose dependent rect. 15 15
702 30.05 wind 1.0 270 > th dose independent rect. 6 19
729 30.06 precipitation 0.1 90 < th dose independent rect. 21 6
732 30.06 humidity 50.0 270 > th dose dependent rect. 23 1
740 30.06 precipitation 0.1 90 < th dose dependent rect. 21 6
755 30.07 wind 9.0 270 < th dose independent rect. 1 20
763 30.07 radiation 1.0 90 < th dose dependent rect. 21 6
768 30.08 wind 9.0 90 < th dose independent rect. 21 6
769 30.08 temperature 10.0 90 > th dose independent rect. 21 6
770 30.08 temperature 30.0 90 < th dose independent rect. 21 6
771 30.08 humidity 50.0 90 > th dose independent rect. 21 6
775 30.08 radiation 1.0 90 < th dose independent rect. 21 6
780 30.08 temperature 10.0 90 > th dose independent rect. 19 8
781 30.08 temperature 30.0 90 < th dose independent rect. 19 8
782 30.08 humidity 50.0 90 > th dose independent rect. 19 8
784 30.08 atmosphere 995.0 90 > th dose independent rect. 19 8
785 30.08 radiation 1.0 90 < th dose independent rect. 19 8
793 30.08 atmosphere 1015.0 90 < th dose independent rect. 3 16
795 30.08 atmosphere 1015.0 90 < th dose independent rect. 3 18
804 30.08 radiation 1.0 90 < th dose dependent rect. 19 8
813 30.09 wind 9.0 90 < th dose independent rect. 19 8
821 30.09 wind 9.0 270 < th dose dependent rect. 19 6
824 30.10 atmosphere 1015.0 270 < th dose independent rect. 6 19
825 30.10 wind 9.0 270 < th dose independent rect. 24 23
828 30.10 wind 9.0 270 < th dose dependent rect. 21 4
843 30.11 humidity 70.0 10 > th dose dependent rect. 8 19
850 30.12 precipitation 0.1 270 < th dose independent rect. 21 4
852 30.12 wind 9.0 90 < th dose independent rect. 3 16
853 30.12 wind 9.0 90 < th dose independent rect. 3 18
862 30.12 precipitation 0.1 270 < th dose dependent rect. 21 4
866 30.12 wind 9.0 90 < th dose dependent rect. 3 18
891 30.14 wind 9.0 270 < th dose independent rect. 21 4
892 30.14 temperature 10.0 270 > th dose independent rect. 21 4
894 30.14 temperature 30.0 270 < th dose independent rect. 21 4
896 30.14 humidity 50.0 270 > th dose independent rect. 21 4
904 30.14 atmosphere 1015.0 90 < th dose independent rect. 23 4
905 30.14 radiation 1.0 270 < th dose independent rect. 21 4
917 30.14 precipitation 0.1 90 < th dose independent rect. 19 8
924 30.14 temperature 10.0 270 > th dose dependent rect. 23 1
931 30.14 radiation 1.0 270 < th dose dependent rect. 21 4
942 30.14 precipitation 0.1 90 < th dose dependent rect. 19 8
963 30.15 temperature 10.0 30 > th dose dependent rect. 3 20
968 30.16 wind 9.0 270 < th dose independent rect. 14 16
978 30.17 temperature 20.0 10 > th dose independent rect. 14 9
995 30.18 atmosphere 995.0 90 > th dose independent rect. 3 20
996 30.18 humidity 80.0 30 > th dose independent rect. 6 21