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Os03g0690600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Similar to SCARECROW-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30.88 | 0.261 | 8.39 | 0.966 | 1.22 | -0.137 | -0.101 | 2.91 | 0.132 | 6.16 | 29.95 | 1258 | -- | -- |
32.2 | 0.264 | 8.46 | 0.398 | 1.24 | 0.168 | -0.0679 | -- | 0.0959 | 6.11 | 33.7 | 4740 | -- | -- |
30.9 | 0.259 | 8.39 | 0.964 | 1.22 | -0.136 | -- | 2.9 | 0.132 | 6.16 | 29.95 | 1257 | -- | -- |
32.14 | 0.264 | 8.46 | 0.382 | 1.23 | 0.176 | -- | -- | 0.0942 | 6.14 | 33.41 | 5453 | -- | -- |
107.39 | 0.483 | 8.4 | 1.1 | -- | -0.154 | -- | 3.53 | 0.168 | -- | 30.09 | 1345 | -- | -- |
33.64 | 0.272 | 8.47 | 0.436 | 1.24 | -- | -0.0656 | -- | 0.0593 | 6.09 | -- | -- | -- | -- |
33.65 | 0.272 | 8.47 | 0.435 | 1.24 | -- | -- | -- | 0.0596 | 6.09 | -- | -- | -- | -- |
109.14 | 0.489 | 8.49 | 0.501 | -- | -0.334 | -- | -- | 0.0761 | -- | 30.09 | 1345 | -- | -- |
35.78 | 0.279 | 8.46 | -- | 1.24 | 0.237 | -- | -- | 0.0663 | 6.13 | 32.9 | 5441 | -- | -- |
113.18 | 0.497 | 8.49 | 0.471 | -- | -- | -- | -- | 0.0874 | -- | -- | -- | -- | -- |
38.65 | 0.291 | 8.48 | -- | 1.24 | -- | -- | -- | 0.0111 | 6.07 | -- | -- | -- | -- |
113.6 | 0.496 | 8.49 | -- | -- | 0.303 | -- | -- | 0.0973 | -- | 32 | 5627 | -- | -- |
119.02 | 0.509 | 8.5 | -- | -- | -- | -- | -- | 0.0352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 28.76 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 4 |
2 | 28.84 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
3 | 28.97 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 5 |
4 | 29.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
6 | 29.04 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
9 | 29.07 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
10 | 29.08 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 3 |
18 | 29.23 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
19 | 29.23 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
21 | 29.25 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
22 | 29.28 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 3 |
25 | 29.29 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
28 | 29.30 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 23 | 4 |
31 | 29.32 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 5 |
36 | 29.34 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
39 | 29.34 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
42 | 29.34 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
43 | 29.34 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
45 | 29.34 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
48 | 29.34 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 21 |
51 | 29.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
53 | 29.37 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 21 |
61 | 29.40 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
66 | 29.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 23 |
67 | 29.43 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
69 | 29.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 23 |
71 | 29.44 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
72 | 29.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 19 |
73 | 29.45 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 20 |
75 | 29.45 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
79 | 29.46 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 23 | 4 |
82 | 29.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
84 | 29.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
85 | 29.48 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 21 |
90 | 29.50 | wind | 9.0 | 4320 | < th | dose independent | rect. | 4 | 3 |
91 | 29.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 21 |
99 | 29.53 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
100 | 29.54 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 20 |
103 | 29.54 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 20 |
105 | 29.55 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 5 |
117 | 29.58 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 21 |
123 | 29.58 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 21 |
124 | 29.59 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 1 |
126 | 29.59 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
129 | 29.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
133 | 29.59 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
138 | 29.59 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
139 | 29.59 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
140 | 29.59 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
145 | 29.59 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
153 | 29.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
156 | 29.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
159 | 29.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
160 | 29.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
161 | 29.60 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
164 | 29.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
186 | 29.63 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 19 |
194 | 29.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
199 | 29.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
201 | 29.67 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 18 |
203 | 29.67 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 18 |
222 | 29.69 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 20 |
227 | 29.70 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
236 | 29.72 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 5 |
243 | 29.72 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 5 |
247 | 29.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
253 | 29.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
256 | 29.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 20 |
257 | 29.74 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
260 | 29.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 20 |
261 | 29.75 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 5 |
264 | 29.75 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
265 | 29.75 | wind | 5.0 | 30 | < th | dose dependent | rect. | 3 | 10 |
268 | 29.76 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 4 |
269 | 29.76 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
271 | 29.77 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 3 |
290 | 29.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 19 |
293 | 29.79 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
329 | 29.82 | wind | 9.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
330 | 29.82 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
337 | 29.83 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 18 |
339 | 29.83 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
340 | 29.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
343 | 29.84 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
346 | 29.84 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
348 | 29.84 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
351 | 29.84 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
360 | 29.85 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 4 |
392 | 29.86 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
396 | 29.87 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 21 | 6 |
404 | 29.88 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
405 | 29.88 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
407 | 29.88 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 21 |
416 | 29.89 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 19 |
423 | 29.89 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 19 |
424 | 29.90 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 1 |
427 | 29.90 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 4 |
428 | 29.90 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 4 |
429 | 29.90 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 4 |
430 | 29.90 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 4 |
435 | 29.90 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 4 |
440 | 29.90 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 4 |
452 | 29.90 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
456 | 29.90 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 4 |
457 | 29.90 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 4 |
462 | 29.90 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 4 |
466 | 29.90 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 21 |
468 | 29.91 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 6 |
469 | 29.91 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 19 |
473 | 29.91 | wind | 9.0 | 90 | < th | dose dependent | rect. | 23 | 4 |
497 | 29.92 | wind | 7.0 | 10 | < th | dose dependent | rect. | 23 | 4 |
499 | 29.92 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 8 | 19 |
516 | 29.93 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 8 |
528 | 29.93 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
533 | 29.94 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 19 |
546 | 29.95 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
549 | 29.95 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
551 | 29.95 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
552 | 29.95 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
553 | 29.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
555 | 29.95 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
568 | 29.96 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 16 |
569 | 29.96 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 20 |
570 | 29.96 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 20 |
574 | 29.96 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
584 | 29.97 | wind | 3.0 | 30 | < th | dose independent | rect. | 3 | 8 |
587 | 29.97 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 14 |
602 | 29.98 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 4 |
605 | 29.98 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
621 | 30.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 23 |
623 | 30.00 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 3 |
651 | 30.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 9 |
653 | 30.03 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 1 |
661 | 30.03 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 20 |
663 | 30.04 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 1 |
664 | 30.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 1 |
665 | 30.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 1 |
669 | 30.04 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 1 |
674 | 30.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 1 |
678 | 30.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
685 | 30.04 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 1 |
690 | 30.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 1 |
694 | 30.04 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
695 | 30.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
702 | 30.05 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 19 |
729 | 30.06 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 6 |
732 | 30.06 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
740 | 30.06 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 6 |
755 | 30.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 20 |
763 | 30.07 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 6 |
768 | 30.08 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 6 |
769 | 30.08 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 6 |
770 | 30.08 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 6 |
771 | 30.08 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 6 |
775 | 30.08 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 6 |
780 | 30.08 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
781 | 30.08 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
782 | 30.08 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
784 | 30.08 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
785 | 30.08 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
793 | 30.08 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
795 | 30.08 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 18 |
804 | 30.08 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
813 | 30.09 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
821 | 30.09 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 6 |
824 | 30.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 19 |
825 | 30.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 23 |
828 | 30.10 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 4 |
843 | 30.11 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
850 | 30.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 4 |
852 | 30.12 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
853 | 30.12 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 18 |
862 | 30.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 4 |
866 | 30.12 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
891 | 30.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 4 |
892 | 30.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 4 |
894 | 30.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 4 |
896 | 30.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 4 |
904 | 30.14 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 4 |
905 | 30.14 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 4 |
917 | 30.14 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
924 | 30.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
931 | 30.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 4 |
942 | 30.14 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
963 | 30.15 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 20 |
968 | 30.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
978 | 30.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 9 |
995 | 30.18 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 20 |
996 | 30.18 | humidity | 80.0 | 30 | > th | dose independent | rect. | 6 | 21 |