Os03g0690000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0690000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.97 | 0.412 | 11.7 | -1.65 | 2.56 | -0.744 | 0.037 | -0.504 | -0.411 | 17.1 | 1011 | 3769 | -- | -- |
| 77.5 | 0.41 | 11.7 | -1.75 | 2.56 | -0.721 | -0.169 | -- | -0.416 | 17.1 | 1011 | 3931 | -- | -- |
| 76.83 | 0.408 | 11.7 | -1.67 | 2.56 | -0.75 | -- | -0.462 | -0.409 | 17.1 | 1011 | 3882 | -- | -- |
| 77.44 | 0.41 | 11.7 | -1.78 | 2.55 | -0.73 | -- | -- | -0.436 | 17.1 | 1011 | 3922 | -- | -- |
| 414.51 | 0.948 | 11.6 | -1.85 | -- | -0.628 | -- | -0.363 | -0.456 | -- | 1012 | 6358 | -- | -- |
| 93.13 | 0.452 | 11.6 | -1.57 | 2.52 | -- | -0.0162 | -- | -0.28 | 17.1 | -- | -- | -- | -- |
| 93.13 | 0.452 | 11.6 | -1.57 | 2.52 | -- | -- | -- | -0.28 | 17.1 | -- | -- | -- | -- |
| 414.7 | 0.948 | 11.6 | -1.95 | -- | -0.627 | -- | -- | -0.488 | -- | 1013 | 6350 | -- | -- |
| 155.3 | 0.58 | 11.6 | -- | 2.55 | -0.288 | -- | -- | -0.17 | 17 | 1011 | 3768 | -- | -- |
| 425.52 | 0.964 | 11.6 | -1.66 | -- | -- | -- | -- | -0.344 | -- | -- | -- | -- | -- |
| 158.28 | 0.589 | 11.6 | -- | 2.55 | -- | -- | -- | -0.105 | 17.1 | -- | -- | -- | -- |
| 474.47 | 1.01 | 11.6 | -- | -- | 0.765 | -- | -- | -0.391 | -- | 1009 | 1081 | -- | -- |
| 498.39 | 1.04 | 11.6 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.67 | radiation | 10 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 2 | 75.88 | radiation | 10 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 6 | 76.35 | radiation | 10 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 8 | 76.48 | radiation | 10 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 9 | 76.67 | radiation | 10 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 12 | 76.85 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 13 | 76.93 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 14 | 76.96 | radiation | 10 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 167 | 77.65 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 17 | NA |
| 198 | 77.70 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 17 | NA |
| 205 | 77.71 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 234 | 77.74 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 273 | 77.79 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 305 | 77.83 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 325 | 77.85 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 331 | 77.86 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 332 | 77.86 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 346 | 77.87 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 356 | 77.88 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 358 | 77.88 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 376 | 77.89 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 411 | 77.92 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 489 | 77.97 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 10 | NA |
| 566 | 78.01 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 628 | 78.04 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 645 | 78.05 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 1 | 5 |
| 683 | 78.06 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 705 | 78.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 709 | 78.07 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 769 | 78.09 | atmosphere | 995 | 14400 | > th | dose dependent | no | NA | NA |
| 797 | 78.10 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 802 | 78.10 | atmosphere | 1015 | 14400 | < th | dose dependent | no | NA | NA |
| 827 | 78.11 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 832 | 78.11 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 878 | 78.13 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 24 | 18 |
| 927 | 78.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 940 | 78.15 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 3 | 7 |