Os03g0688300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os03g0688300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.71 | 0.457 | 11.3 | 0.587 | 2.73 | -2.6 | -1.33 | -0.584 | 0.125 | 6.22 | 1.55 | 742 | 6.93 | -- |
| 94.59 | 0.453 | 11.3 | 0.633 | 2.78 | -2.59 | -1.09 | -- | 0.131 | 6.2 | 1.58 | 748 | 6.95 | -- |
| 96.69 | 0.458 | 11.3 | 0.678 | 2.79 | -2.58 | -- | 0.787 | 0.149 | 6.17 | 1.58 | 751 | 6.97 | -- |
| 97.2 | 0.459 | 11.3 | 0.635 | 2.81 | -2.57 | -- | -- | 0.146 | 6.15 | 1.58 | 756 | 6.99 | -- |
| 190.81 | 0.643 | 11.4 | 0.14 | -- | -4.45 | -- | 2.1 | 0.233 | -- | 1.05 | 484 | 11 | -- |
| 152.99 | 0.58 | 11.3 | 0.485 | 3.91 | -- | -0.795 | -- | -0.031 | 6.78 | -- | -- | -- | -- |
| 154.6 | 0.582 | 11.3 | 0.472 | 3.91 | -- | -- | -- | -0.0287 | 6.79 | -- | -- | -- | -- |
| 124.64 | 0.52 | 11.5 | 0.52 | -- | -4.38 | -- | -- | 0.0458 | -- | 1.61 | 667 | 14.7 | -- |
| 107.34 | 0.483 | 11.4 | -- | 2.89 | -2.43 | -- | -- | 0.0598 | 6.1 | 1.59 | 758 | 7.07 | -- |
| 953.32 | 1.44 | 11.4 | 0.559 | -- | -- | -- | -- | 0.0473 | -- | -- | -- | -- | -- |
| 160.46 | 0.593 | 11.4 | -- | 3.91 | -- | -- | -- | -0.0813 | 6.78 | -- | -- | -- | -- |
| 133 | 0.537 | 11.4 | -- | -- | -4.31 | -- | -- | 0.0509 | -- | 1.586 | 671 | 14.7 | -- |
| 961.55 | 1.45 | 11.4 | -- | -- | -- | -- | -- | -0.0147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.16 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 3 | 95.58 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 7 | 98.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 8 | 98.68 | radiation | 1.0 | 720 | > th | dose independent | sin | 13 | NA |
| 9 | 99.51 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 14 |
| 10 | 99.60 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 13 | 100.05 | radiation | 30.0 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 22 | 101.46 | radiation | 1.0 | 720 | < th | dose independent | sin | 13 | NA |
| 31 | 102.41 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 15 |
| 46 | 103.47 | radiation | 1.0 | 720 | > th | dose independent | rect. | 14 | 5 |
| 58 | 103.76 | radiation | 1.0 | 720 | < th | dose independent | rect. | 2 | 20 |
| 93 | 105.35 | radiation | 1.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 102 | 106.07 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 136 | 107.94 | radiation | 1.0 | 720 | > th | dose independent | sin | 22 | NA |
| 148 | 108.29 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 149 | 108.29 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 158 | 108.52 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 159 | 108.52 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 174 | 108.94 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 175 | 108.94 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 176 | 108.99 | humidity | 50.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 191 | 110.01 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 192 | 110.02 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 15 |
| 225 | 111.15 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 10 |
| 226 | 111.15 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 227 | 111.18 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 230 | 111.22 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 249 | 111.47 | wind | 9.0 | 720 | < th | dose independent | rect. | 13 | 6 |
| 273 | 112.39 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 278 | 112.56 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 280 | 112.59 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 283 | 112.64 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 285 | 112.66 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 301 | 112.71 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 309 | 112.84 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 314 | 113.07 | radiation | 1.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 317 | 113.13 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 318 | 113.13 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 332 | 113.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 333 | 113.49 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 5 |
| 334 | 113.51 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 10 |
| 335 | 113.51 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 336 | 113.52 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 16 | 12 |
| 342 | 113.71 | wind | 1.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 352 | 113.88 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 355 | 113.94 | temperature | 10.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 356 | 113.94 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 13 | 6 |
| 357 | 113.94 | temperature | 10.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 358 | 113.94 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 405 | 114.34 | temperature | 10.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 406 | 114.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 407 | 114.34 | humidity | 50.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 409 | 114.34 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 410 | 114.34 | radiation | 30.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 412 | 114.34 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 413 | 114.34 | temperature | 10.0 | 720 | > th | dose independent | rect. | 7 | 18 |
| 414 | 114.34 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 416 | 114.37 | wind | 9.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 417 | 114.38 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 10 |
| 444 | 114.79 | temperature | 10.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 445 | 114.79 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 10 |
| 446 | 114.79 | humidity | 50.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 447 | 114.79 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 451 | 114.79 | temperature | 10.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 452 | 114.79 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 14 |
| 454 | 114.83 | radiation | 1.0 | 720 | < th | dose independent | sin | 0 | NA |
| 515 | 115.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 521 | 115.47 | temperature | 10.0 | 720 | > th | dose independent | rect. | 7 | 10 |
| 522 | 115.47 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 523 | 115.47 | temperature | 10.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 524 | 115.47 | radiation | 30.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 542 | 115.69 | wind | 9.0 | 720 | < th | dose independent | rect. | 19 | 10 |
| 561 | 116.05 | wind | 9.0 | 720 | < th | dose independent | rect. | 5 | 14 |
| 563 | 116.07 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 580 | 116.19 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 583 | 116.22 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 584 | 116.22 | radiation | 1.0 | 720 | > th | dose independent | rect. | 4 | 15 |
| 629 | 116.24 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 2 |
| 634 | 116.33 | wind | 3.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 635 | 116.33 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 670 | 116.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 691 | 116.62 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 715 | 116.88 | wind | 3.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 716 | 116.88 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 758 | 117.40 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 776 | 117.49 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 19 |
| 777 | 117.49 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 786 | 117.55 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 847 | 117.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 11 |
| 848 | 117.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 851 | 117.84 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 854 | 117.86 | radiation | 1.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 869 | 117.97 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 906 | 118.06 | humidity | 90.0 | 90 | < th | dose independent | rect. | 15 | 4 |
| 933 | 118.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 13 |
| 934 | 118.22 | wind | 9.0 | 720 | < th | dose independent | rect. | 15 | 10 |
| 938 | 118.24 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 953 | 118.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 4 |
| 970 | 118.40 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 20 |
| 995 | 118.60 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 19 | 4 |
| 997 | 118.62 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 2 |