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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0688000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosome-inactivating protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0838) R2 : 0.732
β1 : 2.32 (0.39) R2dD : 0.0414 R2D : -0.0943
β2 : 6.4 (0.197) R2dC : 0.68 R2C : 0.441
β3 : -5.2 (0.279) R2dE : 0.289 R2E : 0.0112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.69 (0.974) R2dD*E : 0.0289 R2D*E : 0.0297
γ1 : 0.62 (0.186) R2dN8 : 0.0127 R2N8 : -0.0438
σ : 1.41
deviance : 913.18
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_____
C
peak time of C : 8.59
E
wheather : temperature
threshold : 20.68
memory length : 1606
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.049
open length of G : 11.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
912.72 1.42 5.33 2.14 6.45 -5.25 0.944 4.24 0.606 8.56 20.5 1612 0.0164 11.7
949.24 1.43 5.49 1.35 5.95 -5.31 1.12 -- 0.42 8.57 20.6 1539 0.35 11.9
913.18 1.41 5.33 2.32 6.4 -5.2 -- 4.69 0.62 8.59 20.68 1606 0.049 11.9
951.92 1.44 5.48 1.19 6.03 -5.54 -- -- 0.398 8.59 20.6 1534 0.445 12
2589.51 2.37 5.61 2.13 -- -5.16 -- 4.68 0.655 -- 24.21 2433 0.66 12.1
1701.61 1.93 5.81 -1.16 5.32 -- 1.93 -- -1.01 8.78 -- -- -- --
1714.03 1.94 5.81 -1.1 5.31 -- -- -- -1.01 8.78 -- -- -- --
1471.63 1.79 6.19 -1.86 -- -5.59 -- -- -1.32 -- 22.4 894 6.97 12.4
979.71 1.46 5.53 -- 6.13 -5.02 -- -- 0.14 8.56 20.51 1560 0.000192 12
3317.17 2.69 5.96 -1.09 -- -- -- -- -0.972 -- -- -- -- --
1745.73 1.95 5.79 -- 5.31 -- -- -- -0.891 8.8 -- -- -- --
1106.03 1.55 5.71 -- -- -8.23 -- -- 0.00894 -- 22 787 6.55 15.4
3348.53 2.7 5.93 -- -- -- -- -- -0.851 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 959.74 temperature 25 720 < th dose dependent rect. 15 20
10 965.12 temperature 25 270 < th dose dependent rect. 21 22
19 969.74 temperature 25 1440 < th dose dependent rect. 3 8
20 970.34 temperature 15 270 > th dose dependent sin 8 NA
27 972.11 temperature 25 720 < th dose dependent rect. 7 22
41 974.89 temperature 15 720 > th dose dependent rect. 16 18
55 977.93 temperature 20 1440 > th dose independent sin 6 NA
57 978.09 temperature 20 1440 > th dose independent rect. 1 10
61 978.42 temperature 25 720 < th dose dependent rect. 3 23
68 979.07 temperature 20 1440 > th dose independent rect. 22 14
70 979.16 temperature 25 720 < th dose dependent rect. 10 23
80 980.16 temperature 20 1440 < th dose independent rect. 1 10
84 980.35 temperature 25 720 < th dose dependent no NA NA
98 981.77 temperature 20 1440 < th dose independent sin 6 NA
99 981.81 temperature 20 1440 > th dose independent rect. 22 17
118 982.93 temperature 20 1440 < th dose independent rect. 22 14
144 984.36 temperature 25 1440 < th dose dependent rect. 21 15
168 985.74 temperature 25 1440 < th dose dependent sin 6 NA
181 986.35 temperature 20 1440 < th dose independent rect. 22 17
191 986.81 temperature 25 720 < th dose dependent sin 12 NA
361 995.59 temperature 20 1440 > th dose independent rect. 17 18
377 996.02 temperature 15 720 > th dose dependent sin 11 NA
395 996.53 temperature 20 1440 > th dose independent rect. 15 16
402 996.85 temperature 20 720 > th dose independent rect. 15 21
510 1000.71 temperature 20 1440 < th dose independent rect. 17 18
522 1001.08 temperature 20 1440 > th dose independent rect. 11 20
525 1001.20 temperature 20 1440 < th dose independent rect. 15 16
612 1003.13 temperature 15 1440 > th dose dependent rect. 3 5
632 1003.57 temperature 15 1440 > th dose dependent rect. 2 7
681 1004.77 temperature 25 4320 < th dose dependent rect. 10 17
682 1004.78 temperature 15 1440 > th dose dependent rect. 21 12
720 1005.46 temperature 10 1440 > th dose dependent rect. 4 1
727 1005.58 temperature 25 4320 < th dose dependent sin 17 NA
734 1005.77 temperature 25 4320 < th dose dependent rect. 14 11
752 1006.02 temperature 25 4320 < th dose dependent rect. 15 9
762 1006.23 temperature 20 1440 < th dose independent rect. 11 20
848 1007.27 temperature 20 1440 > th dose independent no NA NA
872 1007.62 temperature 15 1440 > th dose dependent sin 9 NA