Os03g0687900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0687900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.76 | 0.662 | 8.37 | 1.65 | 3.34 | 1.26 | -3 | -2.33 | 0.444 | 20.6 | 6.224 | 1435 | -- | -- |
| 206.74 | 0.67 | 8.39 | 1.41 | 3.34 | 1.33 | -3.04 | -- | 0.426 | 20.6 | 5.35 | 1447 | -- | -- |
| 224 | 0.697 | 8.37 | 1.78 | 3.25 | 1.37 | -- | -2.99 | 0.437 | 20.4 | 6.093 | 1487 | -- | -- |
| 236.03 | 0.716 | 8.38 | 1.45 | 3.32 | 1.31 | -- | -- | 0.401 | 20.6 | 5.952 | 1447 | -- | -- |
| 543.5 | 1.09 | 8.35 | 1.23 | -- | 1.81 | -- | -2.38 | 0.158 | -- | 6.093 | 1487 | -- | -- |
| 237.9 | 0.723 | 8.45 | 1.21 | 3.36 | -- | -3.17 | -- | 0.135 | 20.6 | -- | -- | -- | -- |
| 270.6 | 0.77 | 8.45 | 1.31 | 3.37 | -- | -- | -- | 0.135 | 20.6 | -- | -- | -- | -- |
| 578.18 | 1.12 | 8.35 | 1.25 | -- | 1.81 | -- | -- | 0.158 | -- | 6.093 | 1487 | -- | -- |
| 285.83 | 0.787 | 8.4 | -- | 3.35 | 1.15 | -- | -- | 0.272 | 20.5 | 9.238 | 1463 | -- | -- |
| 909.11 | 1.41 | 8.36 | 1.3 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 315.63 | 0.831 | 8.48 | -- | 3.37 | -- | -- | -- | -0.0105 | 20.6 | -- | -- | -- | -- |
| 619.6 | 1.16 | 8.38 | -- | -- | 1.81 | -- | -- | 0.0188 | -- | 6.093 | 1487 | -- | -- |
| 953.37 | 1.44 | 8.39 | -- | -- | -- | -- | -- | -0.0393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.03 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 3 | 182.89 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 4 | 182.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 6 | 182.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 11 | 183.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 88 | 190.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 106 | 191.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 107 | 191.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 10 |
| 116 | 192.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 119 | 192.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 126 | 192.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 132 | 192.53 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 190 | 193.61 | humidity | 90 | 1440 | < th | dose dependent | sin | 5 | NA |
| 229 | 195.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 300 | 197.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 324 | 197.37 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 327 | 197.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 352 | 197.67 | humidity | 70 | 1440 | > th | dose independent | sin | 8 | NA |
| 389 | 198.18 | humidity | 50 | 1440 | > th | dose dependent | sin | 4 | NA |
| 399 | 198.35 | humidity | 70 | 1440 | < th | dose independent | sin | 8 | NA |
| 412 | 198.56 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 414 | 198.62 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 487 | 199.37 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 503 | 199.41 | radiation | 40 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 506 | 199.42 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 508 | 199.43 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 606 | 200.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 664 | 200.61 | radiation | 40 | 1440 | < th | dose dependent | sin | 11 | NA |
| 682 | 200.77 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 722 | 201.06 | radiation | 1 | 1440 | > th | dose dependent | sin | 11 | NA |
| 774 | 201.45 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 786 | 201.52 | humidity | 50 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 830 | 201.66 | radiation | 40 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 868 | 201.90 | radiation | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 890 | 202.01 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 934 | 202.15 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 935 | 202.15 | radiation | 10 | 1440 | < th | dose dependent | sin | 12 | NA |
| 961 | 202.23 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 999 | 202.43 | radiation | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |