FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0687200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0174) R2 : 0.427
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.761 (0.0413) R2dC : 0.427 R2C : 0.426
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0307 (0.0365) R2dN8 : 0.00115 R2N8 : -0.000732
σ : 0.328
deviance : 49.04
__
_____
C
peak time of C : 23.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.4 0.287 11.4 1.08 0.882 -0.682 -0.269 2.9 0.246 22.9 22.9 666 -- --
43.05 0.308 11.5 0.464 0.672 -0.322 -0.0596 -- 0.0627 23.2 22.9 666 -- --
37.67 0.286 11.4 1.06 0.884 -0.68 -- 2.74 0.241 22.9 22.96 662 -- --
40.95 0.3 11.5 0.529 0.633 -0.63 -- -- 0.104 23 11.96 47520 -- --
60.44 0.364 11.4 0.819 -- -0.989 -- 1.25 0.232 -- 18.82 2 -- --
44.72 0.314 11.5 0.404 0.756 -- -0.0165 -- 0.0143 23.7 -- -- -- --
44.72 0.313 11.5 0.405 0.756 -- -- -- 0.0143 23.7 -- -- -- --
61.41 0.367 11.5 0.637 -- -1.16 -- -- 0.178 -- 14.5 2 -- --
46.35 0.317 11.5 -- 0.752 0.264 -- -- -0.109 23.7 7.919 47520 -- --
80.7 0.42 11.5 0.426 -- -- -- -- 0.0234 -- -- -- -- --
49.04 0.328 11.5 -- 0.761 -- -- -- -0.0307 23.7 -- -- -- --
71.49 0.395 11.5 -- -- -0.963 -- -- 0.0851 -- 14.5 2 -- --
85.49 0.432 11.5 -- -- -- -- -- -0.0239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.86 temperature 25 30 > th dose independent rect. 19 1
4 36.96 wind 3 90 < th dose dependent rect. 19 1
5 37.04 temperature 20 10 > th dose dependent sin 13 NA
7 37.18 temperature 25 720 < th dose independent rect. 9 14
12 37.33 radiation 1 4320 < th dose independent rect. 18 7
14 37.35 radiation 1 4320 > th dose independent rect. 17 2
15 37.35 radiation 1 4320 < th dose independent rect. 18 2
31 37.38 radiation 1 4320 < th dose independent rect. 18 5
45 37.44 temperature 30 10 < th dose dependent sin 14 NA
49 37.47 temperature 20 270 > th dose dependent sin 15 NA
61 37.49 temperature 20 720 > th dose dependent sin 18 NA
62 37.50 temperature 25 720 > th dose independent rect. 9 14
70 37.57 temperature 20 720 > th dose dependent rect. 10 15
83 37.62 temperature 25 720 > th dose dependent rect. 12 10
98 37.66 temperature 25 720 > th dose dependent rect. 12 19
119 37.70 temperature 25 720 > th dose dependent rect. 14 4
140 37.74 temperature 25 720 < th dose independent sin 20 NA
147 37.75 temperature 30 270 < th dose dependent sin 16 NA
188 37.81 wind 7 43200 < th dose dependent rect. 13 1
199 37.83 wind 1 43200 > th dose dependent rect. 13 3
200 37.83 wind 9 43200 < th dose dependent rect. 13 3
215 37.84 wind 9 1440 > th dose dependent rect. 1 9
232 37.86 temperature 25 720 > th dose independent sin 19 NA
246 37.88 wind 1 43200 > th dose dependent rect. 13 1
251 37.88 temperature 20 270 > th dose dependent rect. 16 14
274 37.94 wind 3 90 < th dose independent rect. 18 2
289 37.96 radiation 1 14400 < th dose dependent rect. 4 1
301 37.97 temperature 10 720 > th dose dependent rect. 13 8
302 37.98 temperature 25 720 > th dose independent rect. 16 4
319 37.99 temperature 10 720 > th dose dependent rect. 9 16
323 38.00 temperature 30 720 < th dose dependent rect. 10 13
340 38.03 wind 9 1440 > th dose independent rect. 1 9
350 38.04 temperature 25 720 > th dose independent rect. 14 8
355 38.05 wind 1 43200 > th dose independent rect. 2 1
364 38.06 temperature 30 720 < th dose dependent rect. 11 11
375 38.08 temperature 25 90 < th dose independent sin 15 NA
376 38.08 wind 1 43200 > th dose independent rect. 7 1
409 38.11 wind 5 43200 < th dose independent rect. 13 5
417 38.11 radiation 1 720 < th dose dependent rect. 8 11
418 38.11 radiation 1 720 < th dose dependent rect. 6 13
441 38.13 radiation 1 14400 < th dose dependent rect. 18 11
449 38.14 radiation 1 14400 < th dose dependent rect. 18 2
461 38.15 radiation 1 14400 < th dose dependent rect. 18 7
469 38.15 radiation 1 720 < th dose dependent rect. 21 22
480 38.17 temperature 25 90 > th dose independent sin 16 NA
481 38.17 wind 5 43200 > th dose independent rect. 13 6
494 38.18 temperature 30 720 < th dose dependent sin 20 NA
497 38.19 wind 1 43200 < th dose independent rect. 7 1
532 38.21 radiation 1 720 > th dose independent rect. 9 10
543 38.21 wind 9 1440 > th dose dependent rect. 9 1
571 38.23 radiation 1 720 > th dose independent rect. 17 13
586 38.23 temperature 20 10 > th dose dependent rect. 17 14
587 38.23 temperature 30 270 < th dose dependent rect. 13 14
643 38.28 wind 1 43200 < th dose dependent rect. 2 1
670 38.29 temperature 25 10 < th dose dependent rect. 12 20
684 38.31 wind 1 43200 < th dose independent rect. 2 1
685 38.31 temperature 25 720 < th dose independent rect. 15 5
848 38.39 radiation 1 720 < th dose dependent rect. 15 4
871 38.41 radiation 1 720 < th dose independent rect. 8 11
899 38.43 radiation 1 720 < th dose dependent rect. 17 2
903 38.43 radiation 1 720 < th dose dependent rect. 8 17
911 38.45 wind 1 43200 > th dose independent rect. 8 4
934 38.46 temperature 25 10 < th dose dependent rect. 14 18
942 38.47 radiation 1 720 < th dose dependent rect. 13 6
951 38.48 wind 9 1440 > th dose independent rect. 9 1
995 38.49 radiation 1 720 < th dose dependent rect. 6 19