Os03g0686500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0686500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.56 | 0.411 | 12.2 | -1.19 | 1.27 | 0.914 | -1.08 | 0.119 | -0.12 | 0.203 | 20.2 | 816 | -- | -- |
| 76.53 | 0.407 | 12.2 | -1.22 | 1.28 | 0.896 | -0.996 | -- | -0.131 | 0.12 | 20.3 | 941 | -- | -- |
| 81.06 | 0.419 | 12.2 | -1.18 | 1.24 | 0.923 | -- | -0.0552 | -0.132 | 24 | 20.4 | 940 | -- | -- |
| 80.94 | 0.419 | 12.2 | -1.18 | 1.27 | 0.913 | -- | -- | -0.137 | 0.0722 | 20.68 | 967 | -- | -- |
| 177.52 | 0.621 | 12.2 | -1.32 | -- | 1.23 | -- | -0.206 | -0.226 | -- | 20.9 | 911 | -- | -- |
| 97.87 | 0.464 | 12.2 | -0.874 | 1.39 | -- | -1.11 | -- | 0.0641 | 0.0732 | -- | -- | -- | -- |
| 103.18 | 0.476 | 12.1 | -0.83 | 1.39 | -- | -- | -- | 0.0697 | 0.0151 | -- | -- | -- | -- |
| 177.29 | 0.62 | 12.2 | -1.3 | -- | 1.19 | -- | -- | -0.247 | -- | 21.21 | 907 | -- | -- |
| 112.86 | 0.495 | 12.2 | -- | 1.3 | 0.482 | -- | -- | -0.049 | 23.8 | 22 | 879 | -- | -- |
| 225.58 | 0.702 | 12.1 | -0.787 | -- | -- | -- | -- | 0.0892 | -- | -- | -- | -- | -- |
| 121.34 | 0.515 | 12.1 | -- | 1.38 | -- | -- | -- | 0.162 | 24 | -- | -- | -- | -- |
| 213.46 | 0.68 | 12.1 | -- | -- | 0.894 | -- | -- | -0.0106 | -- | 21.39 | 882 | -- | -- |
| 241.9 | 0.726 | 12.1 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.33 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 2 | 72.33 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 3 | 72.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 7 | 72.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 9 | 72.67 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 15 | 73.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 24 | 73.47 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 29 | 73.59 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 12 |
| 45 | 73.80 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 70 | 74.21 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 99 | 74.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 133 | 74.73 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 138 | 74.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 142 | 74.81 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 183 | 75.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 205 | 75.25 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 223 | 75.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 512 | 76.65 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 621 | 77.05 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 639 | 77.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 651 | 77.14 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 656 | 77.15 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 710 | 77.30 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 868 | 77.80 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 882 | 77.85 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 925 | 77.97 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |