Os03g0685700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0685700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.08 | 0.581 | 2.91 | -0.0759 | 0.158 | 3.85 | -0.0575 | -8.42 | 0.0341 | 5.28 | 1.2 | 2 | 13.2 | -- |
| 166.8 | 0.602 | 2.9 | -0.176 | 0.163 | 2.46 | -0.302 | -- | 0.0185 | 3.54 | 1.247 | 2 | 14.3 | -- |
| 153.06 | 0.576 | 2.91 | -0.0737 | 0.156 | 3.75 | -- | -8.17 | 0.0324 | 5.29 | 1.194 | 2 | 13.1 | -- |
| 165.57 | 0.599 | 2.89 | -0.0419 | 0.175 | 1.91 | -- | -- | 0.0304 | 4.75 | 1.267 | 2 | 13.8 | -- |
| 154.32 | 0.579 | 2.92 | -0.0714 | -- | 3.7 | -- | -8.1 | 0.0362 | -- | 1.2 | 2 | 13.1 | -- |
| 177.06 | 0.624 | 2.89 | 0.0393 | 0.179 | -- | -0.196 | -- | 0.00721 | 4.24 | -- | -- | -- | -- |
| 177.17 | 0.623 | 2.89 | 0.0413 | 0.178 | -- | -- | -- | 0.00828 | 4.3 | -- | -- | -- | -- |
| 167.19 | 0.602 | 2.89 | -0.0349 | -- | 1.93 | -- | -- | 0.0354 | -- | 1.254 | 2 | 13.8 | -- |
| 165.62 | 0.599 | 2.89 | -- | 0.174 | 1.91 | -- | -- | 0.0351 | 4.74 | 1.261 | 2 | 13.8 | -- |
| 178.88 | 0.625 | 2.89 | 0.0484 | -- | -- | -- | -- | 0.013 | -- | -- | -- | -- | -- |
| 177.21 | 0.623 | 2.89 | -- | 0.179 | -- | -- | -- | 0.00368 | 4.3 | -- | -- | -- | -- |
| 167.22 | 0.602 | 2.89 | -- | -- | 1.92 | -- | -- | 0.039 | -- | 1.249 | 2 | 13.8 | -- |
| 178.94 | 0.624 | 2.89 | -- | -- | -- | -- | -- | 0.00764 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.38 | wind | 1 | 10 | < th | dose dependent | rect. | 13 | 10 |
| 5 | 152.44 | wind | 1 | 30 | < th | dose dependent | rect. | 21 | 2 |
| 9 | 153.20 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 10 |
| 13 | 154.27 | wind | 1 | 10 | < th | dose independent | rect. | 22 | 1 |
| 29 | 155.99 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 32 | 157.39 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 38 | 160.44 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 15 |
| 47 | 161.81 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 70 | 163.03 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 11 |
| 73 | 163.43 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 80 | 163.75 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 82 | 163.89 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 100 | 164.43 | wind | 1 | 10 | > th | dose independent | sin | 19 | NA |
| 101 | 164.45 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 138 | 165.67 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 1 |
| 139 | 165.69 | wind | 1 | 90 | < th | dose independent | sin | 20 | NA |
| 144 | 166.33 | radiation | 10 | 30 | < th | dose independent | rect. | 9 | 1 |
| 157 | 166.39 | wind | 1 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 158 | 166.40 | wind | 1 | 90 | < th | dose independent | rect. | 12 | 1 |
| 159 | 166.40 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 167 | 166.40 | wind | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 176 | 166.41 | wind | 1 | 90 | > th | dose independent | sin | 20 | NA |
| 217 | 166.52 | wind | 1 | 10 | < th | dose dependent | sin | 19 | NA |
| 278 | 166.74 | wind | 1 | 90 | < th | dose dependent | sin | 19 | NA |
| 330 | 167.01 | wind | 1 | 10 | < th | dose independent | sin | 19 | NA |
| 408 | 167.61 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 465 | 167.98 | humidity | 80 | 30 | < th | dose dependent | rect. | 21 | 1 |
| 471 | 168.02 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 1 |
| 494 | 168.08 | wind | 1 | 90 | < th | dose dependent | sin | 1 | NA |
| 500 | 168.10 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 17 |
| 504 | 168.14 | radiation | 10 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 505 | 168.15 | temperature | 25 | 10 | < th | dose independent | rect. | 21 | 1 |
| 549 | 168.33 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 11 |
| 582 | 168.49 | humidity | 80 | 10 | < th | dose independent | rect. | 21 | 1 |
| 661 | 168.81 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 662 | 168.84 | wind | 5 | 10 | > th | dose independent | rect. | 21 | 1 |
| 673 | 168.97 | wind | 5 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 702 | 169.31 | radiation | 1 | 30 | < th | dose independent | rect. | 5 | 1 |
| 762 | 169.66 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 766 | 169.67 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 1 |
| 787 | 169.72 | humidity | 90 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 804 | 169.83 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 22 | 1 |
| 851 | 170.05 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 2 |
| 862 | 170.11 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 871 | 170.20 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 15 |
| 872 | 170.22 | temperature | 20 | 90 | < th | dose independent | rect. | 4 | 18 |
| 883 | 170.29 | wind | 7 | 30 | < th | dose independent | rect. | 21 | 1 |
| 884 | 170.29 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 15 |
| 886 | 170.30 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 1 |
| 896 | 170.34 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 7 |
| 925 | 170.46 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 20 | 1 |
| 939 | 170.46 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 940 | 170.46 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 952 | 170.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 958 | 170.47 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 13 |
| 965 | 170.48 | temperature | 25 | 720 | > th | dose independent | sin | 11 | NA |