Os03g0685500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CHCH domain containing protein.
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Os03g0685500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CHCH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.9 | 0.199 | 14.4 | 0.301 | 0.353 | -0.673 | 0.367 | 0.132 | -0.0238 | 14.4 | 21.41 | 1659 | -- | -- |
| 17.94 | 0.197 | 14.4 | 0.266 | 0.355 | -0.682 | 0.368 | -- | -0.0319 | 14.4 | 21.48 | 1659 | -- | -- |
| 18.31 | 0.199 | 14.4 | 0.311 | 0.355 | -0.624 | -- | 0.201 | -0.021 | 14.5 | 21.7 | 1684 | -- | -- |
| 18.37 | 0.2 | 14.4 | 0.261 | 0.356 | -0.65 | -- | -- | -0.0265 | 14.6 | 21.72 | 1653 | -- | -- |
| 24.79 | 0.232 | 14.4 | 0.332 | -- | -0.613 | -- | 0.307 | 0.0289 | -- | 22.5 | 2416 | -- | -- |
| 31.34 | 0.262 | 14.4 | -0.0264 | 0.355 | -- | 0.318 | -- | -0.227 | 14.4 | -- | -- | -- | -- |
| 31.69 | 0.264 | 14.4 | -0.0176 | 0.357 | -- | -- | -- | -0.225 | 14.6 | -- | -- | -- | -- |
| 24.92 | 0.232 | 14.4 | 0.218 | -- | -0.611 | -- | -- | -0.0017 | -- | 22.54 | 2401 | -- | -- |
| 19.55 | 0.206 | 14.4 | -- | 0.347 | -0.551 | -- | -- | -0.064 | 14.5 | 22.19 | 1620 | -- | -- |
| 39.18 | 0.292 | 14.4 | -0.0327 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 31.7 | 0.263 | 14.4 | -- | 0.358 | -- | -- | -- | -0.223 | 14.6 | -- | -- | -- | -- |
| 25.6 | 0.236 | 14.4 | -- | -- | -0.564 | -- | -- | -0.0614 | -- | 22.25 | 1241 | -- | -- |
| 39.21 | 0.292 | 14.4 | -- | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 3 | 17.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 12 | 17.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 36 | 17.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 145 | 17.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 155 | 17.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 160 | 17.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 161 | 17.69 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 395 | 18.11 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 418 | 18.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 457 | 18.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 479 | 18.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 504 | 18.28 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 532 | 18.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 599 | 18.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 609 | 18.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 634 | 18.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 644 | 18.47 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 676 | 18.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 679 | 18.52 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 687 | 18.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 696 | 18.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 697 | 18.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 698 | 18.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 699 | 18.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 736 | 18.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 738 | 18.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 740 | 18.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 742 | 18.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 788 | 18.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 799 | 18.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 820 | 18.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 836 | 18.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 877 | 18.76 | temperature | 25 | 270 | < th | dose dependent | sin | 17 | NA |
| 910 | 18.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |