Os03g0685100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
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Os03g0685100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA/rRNA methyltransferase, SpoU domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.82 | 0.659 | 8.73 | 1.57 | 2.58 | 0.856 | -0.457 | -1.92 | -0.309 | 18.4 | 19.19 | 88 | -- | -- |
| 207.77 | 0.671 | 8.76 | 1.43 | 2.57 | 1.22 | -0.352 | -- | -0.348 | 18.4 | 19.1 | 104 | -- | -- |
| 197.32 | 0.654 | 8.73 | 1.58 | 2.58 | 0.865 | -- | -1.89 | -0.311 | 18.4 | 19.19 | 86 | -- | -- |
| 207.86 | 0.671 | 8.76 | 1.43 | 2.6 | 1.23 | -- | -- | -0.351 | 18.4 | 19.1 | 104 | -- | -- |
| 539.42 | 1.09 | 8.68 | 1.47 | -- | 0.671 | -- | -2.02 | -0.384 | -- | 19.2 | 49 | -- | -- |
| 242.89 | 0.731 | 8.8 | 1.05 | 2.55 | -- | -0.488 | -- | -0.512 | 18.7 | -- | -- | -- | -- |
| 243.47 | 0.731 | 8.8 | 1.05 | 2.55 | -- | -- | -- | -0.513 | 18.6 | -- | -- | -- | -- |
| 551.65 | 1.09 | 8.73 | 1.37 | -- | 1.48 | -- | -- | -0.44 | -- | 18.4 | 92 | -- | -- |
| 254.64 | 0.743 | 8.8 | -- | 2.57 | 0.586 | -- | -- | -0.502 | 18.5 | 20.1 | 63 | -- | -- |
| 582.67 | 1.13 | 8.75 | 0.994 | -- | -- | -- | -- | -0.565 | -- | -- | -- | -- | -- |
| 272.76 | 0.773 | 8.83 | -- | 2.54 | -- | -- | -- | -0.631 | 18.7 | -- | -- | -- | -- |
| 594.03 | 1.14 | 8.76 | -- | -- | 0.658 | -- | -- | -0.605 | -- | 19.19 | 66 | -- | -- |
| 608.71 | 1.15 | 8.78 | -- | -- | -- | -- | -- | -0.675 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 4 | 186.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 186.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 10 | 187.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 14 | 188.83 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 32 | 191.74 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 14 |
| 38 | 192.18 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 18 |
| 43 | 192.44 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 45 | 192.53 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 15 |
| 48 | 193.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 57 | 193.46 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 76 | 193.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 77 | 193.96 | temperature | 20 | 30 | < th | dose independent | sin | 9 | NA |
| 105 | 194.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 17 |
| 113 | 194.76 | temperature | 25 | 10 | < th | dose dependent | sin | 10 | NA |
| 139 | 195.21 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 19 |
| 140 | 195.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 144 | 195.28 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 7 |
| 155 | 195.43 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 161 | 195.50 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 11 |
| 172 | 195.68 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 9 |
| 178 | 195.72 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 13 |
| 235 | 196.53 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 11 |
| 246 | 196.62 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 13 |
| 250 | 196.68 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 251 | 196.69 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 254 | 196.72 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 7 |
| 282 | 196.95 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 15 |
| 309 | 197.18 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 16 |
| 325 | 197.27 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 347 | 197.41 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 434 | 198.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 459 | 198.58 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 17 |
| 470 | 198.68 | radiation | 10 | 30 | < th | dose dependent | rect. | 23 | 11 |
| 473 | 198.70 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 480 | 198.77 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 20 |
| 485 | 198.83 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 18 |
| 507 | 199.02 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 14 |
| 511 | 199.04 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 20 |
| 529 | 199.16 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 20 |
| 546 | 199.27 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 552 | 199.30 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 23 |
| 565 | 199.38 | temperature | 30 | 30 | < th | dose independent | rect. | 6 | 17 |
| 583 | 199.44 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 602 | 199.56 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 10 |
| 608 | 199.61 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 18 |
| 632 | 199.78 | wind | 5 | 30 | < th | dose independent | rect. | 23 | 7 |
| 634 | 199.79 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 650 | 199.86 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 22 |
| 678 | 200.01 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 688 | 200.07 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 689 | 200.07 | temperature | 20 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 761 | 200.29 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 23 |
| 786 | 200.42 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 836 | 200.68 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 846 | 200.74 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 874 | 200.86 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 899 | 200.97 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 14 |
| 990 | 201.29 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 23 |
| 991 | 201.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 14 |