FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0684800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.43 (0.0323) R2 : 0.521
β1 : 2.06 (0.122) R2dD : 0.333 R2D : 0.142
β2 : 0.957 (0.0819) R2dC : 0.145 R2C : 0.11
β3 : -0.948 (0.111) R2dE : 0.0831 R2E : -0.0535
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.713 (0.0689) R2dN8 : 0.151 R2N8 : 0.0556
σ : 0.603
deviance : 167.89
__
_____
C
peak time of C : 3.75
E
wheather : temperature
threshold : 26.16
memory length : 3383
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.37 0.606 5.36 2.49 0.986 -0.93 0.939 1.5 0.899 3.87 25.27 1387 -- --
165.43 0.599 5.43 2.08 0.953 -0.941 0.895 -- 0.715 3.76 26.25 3371 -- --
168.88 0.605 5.36 2.48 0.997 -0.933 -- 1.57 0.912 3.84 24.96 1362 -- --
167.89 0.603 5.43 2.06 0.957 -0.948 -- -- 0.713 3.75 26.16 3383 -- --
199 0.661 5.43 1.93 -- -1.25 -- -0.59 0.805 -- 24.96 1362 -- --
192.61 0.651 5.43 1.8 0.907 -- 0.83 -- 0.709 4.04 -- -- -- --
194.58 0.653 5.44 1.79 0.912 -- -- -- 0.705 4.03 -- -- -- --
199.16 0.66 5.42 2 -- -1.3 -- -- 0.823 -- 24.96 1362 -- --
271.07 0.767 5.49 -- 0.983 -0.486 -- -- 0.448 3.92 28.7 3310 -- --
239.96 0.724 5.44 1.83 -- -- -- -- 0.729 -- -- -- -- --
279.05 0.781 5.48 -- 0.947 -- -- -- 0.505 4 -- -- -- --
295.68 0.801 5.47 -- -- -1.07 -- -- 0.58 -- 25 267 -- --
328.04 0.845 5.49 -- -- -- -- -- 0.526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.86 radiation 20.0 4320 < th dose independent rect. 16 16
2 161.78 radiation 20.0 4320 > th dose dependent rect. 16 15
3 162.39 humidity 60.0 14400 < th dose dependent rect. 16 4
19 162.74 radiation 20.0 4320 > th dose dependent rect. 16 1
33 162.80 radiation 30.0 4320 < th dose independent rect. 15 19
34 162.82 temperature 25.0 1440 > th dose dependent rect. 12 1
38 163.25 humidity 50.0 14400 > th dose independent rect. 16 18
40 163.31 humidity 50.0 14400 < th dose independent rect. 16 19
41 163.40 humidity 50.0 14400 < th dose independent rect. 17 17
43 163.54 radiation 30.0 4320 < th dose independent sin 12 NA
50 163.89 wind 5.0 43200 < th dose independent rect. 6 1
51 163.89 wind 3.0 43200 > th dose dependent rect. 6 2
52 163.90 wind 5.0 43200 > th dose independent rect. 6 1
87 164.06 humidity 50.0 14400 > th dose independent rect. 17 16
92 164.19 radiation 20.0 4320 < th dose independent rect. 1 7
94 164.20 radiation 20.0 4320 < th dose independent rect. 5 3
101 164.22 radiation 20.0 4320 > th dose dependent rect. 15 18
129 164.59 wind 3.0 43200 < th dose independent rect. 4 1
130 164.66 humidity 60.0 14400 < th dose independent rect. 17 3
141 164.66 wind 9.0 43200 < th dose dependent rect. 3 7
148 164.72 wind 3.0 43200 < th dose independent rect. 3 3
150 164.74 wind 3.0 43200 > th dose independent rect. 3 3
152 164.76 wind 3.0 43200 > th dose independent rect. 4 1
154 164.78 wind 1.0 43200 > th dose dependent rect. 3 5
158 164.81 wind 1.0 43200 > th dose dependent rect. 3 7
174 164.85 humidity 80.0 14400 > th dose independent rect. 17 2
175 164.85 humidity 50.0 14400 > th dose independent rect. 16 5
180 164.86 humidity 50.0 14400 > th dose independent rect. 16 14
188 164.89 humidity 50.0 14400 > th dose independent rect. 16 10
199 164.93 precipitation 0.1 43200 > th dose dependent rect. 19 2
218 164.98 radiation 1.0 4320 < th dose independent rect. 18 11
227 164.99 wind 7.0 43200 < th dose dependent rect. 3 10
231 165.02 temperature 30.0 1440 < th dose independent rect. 13 2
236 165.04 radiation 20.0 4320 > th dose independent rect. 16 16
240 165.05 radiation 10.0 14400 < th dose independent rect. 17 1
256 165.12 humidity 80.0 14400 < th dose independent rect. 17 1
262 165.14 radiation 1.0 4320 < th dose independent rect. 18 3
280 165.17 radiation 1.0 4320 < th dose independent rect. 18 9
293 165.20 humidity 50.0 14400 > th dose independent rect. 16 1
308 165.23 humidity 80.0 43200 < th dose independent rect. 22 1
310 165.23 radiation 30.0 4320 > th dose independent rect. 15 18
313 165.24 wind 1.0 43200 > th dose dependent rect. 3 10
343 165.33 temperature 25.0 4320 > th dose dependent rect. 6 4
346 165.35 temperature 25.0 4320 > th dose dependent rect. 8 2
417 165.47 radiation 30.0 4320 > th dose dependent sin 12 NA
419 165.49 temperature 30.0 1440 > th dose independent rect. 13 2
427 165.52 humidity 70.0 14400 < th dose independent rect. 19 13
479 165.66 precipitation 0.1 43200 > th dose dependent rect. 17 4
481 165.66 temperature 25.0 1440 > th dose dependent rect. 23 16
496 165.73 wind 9.0 43200 > th dose dependent rect. 20 10
542 165.84 temperature 25.0 1440 > th dose dependent rect. 5 10
566 165.88 temperature 25.0 1440 > th dose dependent rect. 20 19
573 165.90 radiation 40.0 4320 < th dose dependent rect. 16 17
577 165.92 wind 9.0 43200 > th dose dependent rect. 20 3
593 165.96 wind 9.0 43200 > th dose independent rect. 20 10
606 166.01 wind 9.0 43200 < th dose dependent rect. 5 1
608 166.01 precipitation 0.1 43200 > th dose dependent rect. 16 2
641 166.07 humidity 80.0 43200 > th dose independent rect. 23 1
646 166.09 precipitation 0.1 43200 < th dose independent rect. 16 2
648 166.09 precipitation 0.1 43200 < th dose dependent rect. 16 2
664 166.13 precipitation 0.1 43200 > th dose independent rect. 16 2
673 166.15 wind 9.0 43200 < th dose independent rect. 20 9
674 166.15 temperature 25.0 1440 > th dose dependent sin 0 NA
682 166.16 radiation 1.0 4320 > th dose independent rect. 18 11
697 166.19 radiation 30.0 4320 > th dose independent sin 12 NA
748 166.27 temperature 25.0 1440 > th dose dependent rect. 10 21
792 166.31 temperature 25.0 1440 > th dose dependent rect. 23 22
800 166.32 temperature 25.0 1440 > th dose dependent rect. 10 17
822 166.34 humidity 80.0 14400 > th dose dependent rect. 21 1
944 166.44 wind 3.0 43200 > th dose dependent sin 5 NA
960 166.46 wind 5.0 43200 > th dose independent rect. 9 1
973 166.47 temperature 25.0 1440 > th dose dependent rect. 5 22
975 166.48 atmosphere 1005.0 1440 > th dose independent rect. 16 2
977 166.48 temperature 25.0 1440 > th dose dependent no NA NA
996 166.50 wind 9.0 43200 < th dose independent rect. 19 3