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Os03g0684700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HPP family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.13 (0.0421) R2 : 0.666
β1 : -3.34 (0.154) R2dD : 0.364 R2D : 0.221
β2 : 0.695 (0.124) R2dC : 0.0311 R2C : 0.00539
β3 : -1.57 (0.173) R2dE : 0.09 R2E : 0.0248
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.69 (0.0939) R2dN8 : 0.354 R2N8 : 0.0651
σ : 0.781
deviance : 281.05
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_____
C
peak time of C : 19.7
E
wheather : humidity
threshold : 90.36
memory length : 789
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.51 0.777 8.15 -3.18 0.615 -1.56 -1.32 -2.01 -1.67 20.1 90 752 -- --
280.73 0.78 8.13 -3.35 0.675 -1.57 -0.363 -- -1.69 19.8 90.16 775 -- --
277.04 0.775 8.15 -3.2 0.688 -1.53 -- -1.31 -1.66 19.7 90.97 790 -- --
281.05 0.781 8.13 -3.34 0.695 -1.57 -- -- -1.69 19.7 90.36 789 -- --
293.17 0.797 8.1 -3.16 -- -1.61 -- -1.17 -1.59 -- 89 728 -- --
327.59 0.849 8.09 -3.56 1.27 -- 0.0477 -- -1.43 20.5 -- -- -- --
327.6 0.848 8.09 -3.56 1.27 -- -- -- -1.43 20.5 -- -- -- --
296.35 0.802 8.13 -3.31 -- -1.96 -- -- -1.78 -- 90.93 695 -- --
568.71 1.11 8.09 -- 0.512 -2.24 -- -- -1.45 18.5 90 790 -- --
417.67 0.955 8.06 -3.56 -- -- -- -- -1.44 -- -- -- -- --
661.32 1.2 8 -- 1.28 -- -- -- -1.03 20.3 -- -- -- --
579.16 1.12 8.07 -- -- -2.41 -- -- -1.48 -- 90.28 748 -- --
752.7 1.28 7.97 -- -- -- -- -- -1.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.00 humidity 80.0 14400 > th dose independent rect. 15 1
2 271.21 humidity 90.0 720 > th dose independent rect. 5 21
8 272.35 humidity 90.0 720 > th dose dependent sin 22 NA
15 273.20 humidity 90.0 720 > th dose dependent rect. 6 20
16 273.33 precipitation 0.1 1440 < th dose independent rect. 16 2
17 273.33 precipitation 0.1 1440 < th dose dependent rect. 16 2
18 273.47 humidity 80.0 1440 < th dose independent rect. 10 7
20 273.61 precipitation 0.1 14400 > th dose dependent rect. 17 1
21 273.65 wind 1.0 14400 < th dose independent rect. 4 1
24 273.74 humidity 80.0 1440 > th dose independent rect. 10 7
25 273.83 humidity 90.0 720 > th dose independent rect. 1 23
29 273.94 humidity 90.0 720 > th dose independent rect. 13 23
33 274.03 precipitation 0.1 1440 < th dose independent rect. 16 4
34 274.03 precipitation 0.1 1440 < th dose dependent rect. 16 4
35 274.05 humidity 90.0 720 > th dose independent no NA NA
36 274.06 humidity 90.0 720 > th dose independent rect. 11 23
39 274.12 humidity 90.0 720 > th dose independent rect. 17 23
40 274.13 wind 3.0 14400 < th dose dependent rect. 2 1
51 274.47 humidity 80.0 14400 > th dose dependent rect. 13 2
54 274.53 precipitation 0.1 1440 > th dose independent rect. 16 4
55 274.53 humidity 90.0 720 > th dose independent rect. 8 23
74 275.12 humidity 80.0 1440 > th dose dependent rect. 9 8
76 275.13 precipitation 0.1 720 > th dose independent rect. 19 20
77 275.14 wind 1.0 14400 > th dose independent rect. 4 1
78 275.15 humidity 90.0 270 > th dose dependent rect. 4 23
88 275.37 humidity 90.0 720 > th dose independent rect. 22 23
90 275.42 precipitation 0.1 720 > th dose independent rect. 21 20
124 276.09 humidity 80.0 43200 > th dose independent rect. 6 1
125 276.10 precipitation 0.1 1440 > th dose independent rect. 16 2
127 276.12 humidity 90.0 720 < th dose independent rect. 6 22
136 276.29 precipitation 0.1 720 > th dose independent rect. 19 14
153 276.63 precipitation 0.1 720 > th dose independent rect. 19 16
155 276.64 precipitation 0.1 720 > th dose independent rect. 19 11
160 276.69 precipitation 0.1 14400 > th dose dependent rect. 13 3
173 276.87 humidity 70.0 1440 > th dose dependent rect. 10 20
181 277.01 humidity 90.0 720 > th dose independent sin 22 NA
184 277.03 humidity 70.0 1440 > th dose dependent rect. 10 18
186 277.09 precipitation 0.1 14400 < th dose independent rect. 13 3
187 277.09 precipitation 0.1 14400 < th dose dependent rect. 13 3
189 277.15 precipitation 0.1 14400 > th dose independent rect. 13 3
196 277.22 humidity 80.0 1440 > th dose independent rect. 9 19
200 277.26 precipitation 0.1 14400 > th dose independent rect. 17 1
205 277.33 precipitation 0.1 14400 < th dose independent rect. 17 1
206 277.33 precipitation 0.1 14400 < th dose dependent rect. 17 1
209 277.39 humidity 90.0 720 < th dose independent rect. 3 22
212 277.42 humidity 80.0 1440 < th dose independent rect. 9 18
215 277.45 precipitation 0.1 720 > th dose dependent rect. 20 21
220 277.52 humidity 70.0 1440 > th dose dependent rect. 10 5
235 277.65 precipitation 0.1 1440 > th dose dependent rect. 15 6
259 277.95 humidity 90.0 720 < th dose independent rect. 13 22
275 278.09 humidity 90.0 720 < th dose independent rect. 22 23
279 278.13 precipitation 0.1 1440 < th dose independent rect. 5 11
282 278.13 precipitation 0.1 1440 < th dose dependent rect. 5 11
298 278.24 humidity 90.0 720 > th dose dependent rect. 7 14
301 278.27 humidity 80.0 720 > th dose dependent rect. 18 23
303 278.28 humidity 90.0 270 > th dose dependent no NA NA
305 278.28 humidity 90.0 270 > th dose dependent rect. 13 23
312 278.32 precipitation 0.1 1440 > th dose independent rect. 5 11
317 278.37 humidity 90.0 270 > th dose dependent rect. 16 23
336 278.53 humidity 90.0 720 < th dose independent rect. 18 23
348 278.61 humidity 90.0 270 > th dose dependent rect. 22 23
353 278.66 humidity 90.0 720 < th dose independent no NA NA
368 278.76 precipitation 0.1 1440 < th dose independent rect. 7 9
369 278.76 precipitation 0.1 1440 < th dose dependent rect. 7 9
410 279.00 humidity 90.0 720 < th dose independent rect. 16 23
436 279.21 humidity 80.0 1440 > th dose dependent rect. 24 20
442 279.24 humidity 90.0 90 > th dose independent rect. 24 23
475 279.42 precipitation 0.1 1440 > th dose dependent rect. 16 2
494 279.58 humidity 90.0 270 < th dose independent rect. 16 17
496 279.58 radiation 10.0 14400 < th dose dependent rect. 13 1
533 279.85 precipitation 0.1 1440 < th dose independent rect. 19 22
537 279.85 precipitation 0.1 1440 < th dose dependent rect. 19 22
539 279.86 humidity 80.0 43200 < th dose independent rect. 6 1
562 279.99 precipitation 0.1 1440 > th dose dependent rect. 4 12
598 280.15 atmosphere 1010.0 4320 < th dose dependent rect. 9 5
616 280.24 precipitation 0.1 720 > th dose independent sin 9 NA
630 280.29 precipitation 0.1 720 < th dose independent sin 9 NA
633 280.29 precipitation 0.1 720 < th dose dependent sin 9 NA
660 280.39 atmosphere 1010.0 4320 < th dose dependent rect. 11 3
663 280.41 wind 9.0 14400 > th dose dependent rect. 10 1
693 280.55 atmosphere 1010.0 4320 < th dose dependent rect. 9 2
695 280.56 atmosphere 1010.0 4320 < th dose dependent rect. 13 1
729 280.68 precipitation 0.1 1440 < th dose independent rect. 21 20
732 280.68 precipitation 0.1 1440 < th dose dependent rect. 21 20
746 280.73 precipitation 0.1 14400 > th dose independent rect. 13 1
779 280.84 humidity 60.0 1440 > th dose dependent rect. 13 2
809 280.95 humidity 70.0 1440 < th dose independent rect. 15 1
827 281.00 humidity 90.0 720 > th dose independent sin 13 NA
828 281.00 radiation 10.0 14400 < th dose independent rect. 13 1
855 281.11 radiation 10.0 14400 > th dose independent rect. 13 1
864 281.13 radiation 1.0 1440 > th dose independent rect. 6 11
884 281.18 wind 1.0 14400 < th dose dependent rect. 3 3
930 281.42 humidity 80.0 1440 < th dose independent sin 20 NA
931 281.42 radiation 1.0 1440 < th dose independent rect. 6 11