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Os03g0684300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.28 (0.0249) R2 : 0.325
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.807 (0.0649) R2dC : 0.23 R2C : 0.209
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.408 (0.0524) R2dN8 : 0.116 R2N8 : 0.0944
σ : 0.47
deviance : 100.88
__
_____
C
peak time of C : 6.97
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.93 0.425 7.43 -0.804 0.815 0.594 0.876 -5.29 0.182 6.9 25.09 4581 -- --
87.97 0.44 7.28 0.424 0.868 0.486 1.07 -- 0.391 6.23 18.5 3732 -- --
83.77 0.426 7.43 -0.777 0.823 0.561 -- -5.09 0.179 6.97 25.03 4733 -- --
90.72 0.447 7.28 0.45 0.862 0.42 -- -- 0.398 6.39 18.5 3732 -- --
118.62 0.507 7.44 -0.718 -- 0.498 -- -4.34 0.159 -- 24.83 5697 -- --
91.24 0.448 7.26 0.524 0.799 -- 0.871 -- 0.47 6.91 -- -- -- --
93.18 0.452 7.26 0.541 0.801 -- -- -- 0.469 7.01 -- -- -- --
124.25 0.519 7.3 0.369 -- 0.381 -- -- 0.398 -- 14.5 5712 -- --
92.4 0.448 7.31 -- 0.809 0.488 -- -- 0.26 7.07 10.01 40325 -- --
126.91 0.526 7.28 0.557 -- -- -- -- 0.483 -- -- -- -- --
100.88 0.47 7.28 -- 0.807 -- -- -- 0.408 6.97 -- -- -- --
126.11 0.523 7.33 -- -- 0.498 -- -- 0.278 -- 8.793 40314 -- --
135.09 0.543 7.3 -- -- -- -- -- 0.422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.96 radiation 40.0 30 < th dose independent rect. 9 5
3 78.44 radiation 40.0 90 < th dose dependent rect. 9 5
5 78.61 radiation 40.0 270 < th dose independent rect. 7 7
13 78.96 temperature 10.0 10 > th dose dependent rect. 9 20
14 79.06 radiation 40.0 270 < th dose independent rect. 7 19
17 79.12 temperature 20.0 270 > th dose dependent rect. 18 18
20 79.23 atmosphere 1010.0 30 < th dose independent rect. 9 5
21 79.23 temperature 20.0 270 > th dose dependent rect. 17 20
22 79.24 temperature 20.0 270 > th dose dependent rect. 9 1
25 79.30 radiation 40.0 43200 < th dose independent rect. 16 4
31 79.39 temperature 20.0 270 > th dose dependent rect. 8 3
35 79.46 temperature 10.0 270 > th dose dependent rect. 17 20
58 79.75 temperature 25.0 270 > th dose independent rect. 17 20
62 79.81 wind 9.0 43200 > th dose independent rect. 18 2
71 79.87 temperature 10.0 10 > th dose dependent rect. 9 17
89 80.05 radiation 20.0 4320 < th dose independent rect. 7 2
99 80.10 wind 9.0 43200 > th dose dependent rect. 18 2
102 80.11 radiation 20.0 4320 < th dose independent rect. 6 4
103 80.11 radiation 20.0 4320 < th dose independent rect. 21 13
107 80.12 radiation 20.0 4320 < th dose independent rect. 1 9
114 80.13 humidity 80.0 43200 > th dose independent rect. 12 2
124 80.15 temperature 10.0 270 > th dose dependent rect. 20 16
147 80.30 radiation 1.0 4320 > th dose dependent rect. 7 1
150 80.32 temperature 10.0 90 > th dose dependent rect. 20 18
151 80.33 radiation 20.0 4320 < th dose independent sin 10 NA
174 80.38 precipitation 0.1 43200 > th dose dependent rect. 18 1
175 80.39 wind 7.0 43200 < th dose independent rect. 11 2
178 80.40 radiation 40.0 4320 < th dose dependent rect. 7 1
180 80.40 radiation 1.0 4320 > th dose dependent rect. 18 15
189 80.43 radiation 1.0 4320 > th dose dependent rect. 5 4
206 80.46 wind 5.0 43200 > th dose dependent rect. 11 1
213 80.47 humidity 80.0 43200 > th dose dependent rect. 10 5
225 80.49 wind 9.0 43200 < th dose independent rect. 18 2
227 80.50 wind 1.0 43200 > th dose independent rect. 21 1
236 80.51 wind 1.0 43200 < th dose independent rect. 21 1
237 80.51 precipitation 0.1 43200 < th dose independent rect. 18 1
238 80.51 precipitation 0.1 43200 < th dose dependent rect. 18 1
239 80.51 humidity 80.0 43200 > th dose dependent rect. 12 2
245 80.54 wind 7.0 43200 > th dose independent rect. 10 3
252 80.55 radiation 30.0 4320 < th dose dependent rect. 21 12
254 80.56 precipitation 0.1 43200 < th dose independent rect. 8 2
256 80.56 humidity 80.0 43200 < th dose independent rect. 12 4
258 80.56 precipitation 0.1 43200 < th dose dependent rect. 8 2
265 80.57 radiation 30.0 4320 < th dose dependent rect. 2 7
273 80.58 radiation 30.0 4320 < th dose dependent rect. 5 4
278 80.59 temperature 25.0 270 > th dose independent rect. 7 5
280 80.60 precipitation 0.1 43200 > th dose independent rect. 8 2
283 80.60 precipitation 0.1 43200 > th dose dependent rect. 8 2
307 80.64 humidity 80.0 43200 < th dose independent rect. 15 1
312 80.65 radiation 10.0 43200 > th dose independent rect. 5 1
330 80.66 temperature 25.0 270 > th dose independent rect. 24 12
333 80.67 precipitation 0.1 43200 > th dose independent rect. 18 1
338 80.68 radiation 20.0 43200 < th dose dependent rect. 8 1
347 80.70 radiation 1.0 43200 > th dose independent rect. 13 1
349 80.70 radiation 1.0 43200 < th dose independent rect. 13 1
354 80.70 radiation 1.0 43200 < th dose dependent rect. 13 1
355 80.70 wind 1.0 43200 < th dose dependent rect. 19 3
363 80.72 humidity 70.0 43200 < th dose independent rect. 18 1
369 80.73 radiation 10.0 43200 < th dose independent rect. 9 2
380 80.74 radiation 40.0 270 < th dose dependent rect. 7 19
391 80.76 wind 1.0 43200 < th dose dependent rect. 21 1
392 80.76 humidity 80.0 43200 > th dose dependent rect. 10 1
395 80.77 radiation 10.0 43200 < th dose independent rect. 11 1
399 80.77 radiation 40.0 43200 < th dose independent rect. 16 8
430 80.81 temperature 25.0 43200 > th dose independent rect. 12 1
585 81.00 temperature 25.0 43200 < th dose independent rect. 11 1
588 81.00 humidity 70.0 43200 > th dose independent rect. 8 2
589 81.00 wind 1.0 43200 < th dose independent rect. 19 3
642 81.04 radiation 20.0 43200 < th dose dependent rect. 7 4
675 81.06 humidity 90.0 43200 < th dose independent rect. 18 2
700 81.08 temperature 25.0 270 > th dose independent rect. 9 2
703 81.08 humidity 80.0 43200 < th dose dependent rect. 8 2
713 81.08 temperature 10.0 270 > th dose dependent rect. 6 20
717 81.09 radiation 10.0 43200 > th dose independent rect. 7 2
745 81.10 radiation 10.0 720 < th dose independent rect. 7 2
797 81.15 humidity 70.0 43200 < th dose independent rect. 8 4
809 81.16 humidity 90.0 43200 < th dose independent rect. 9 2
832 81.18 humidity 70.0 43200 > th dose independent rect. 7 5
837 81.19 humidity 70.0 43200 > th dose independent rect. 18 2
838 81.20 wind 5.0 14400 > th dose independent rect. 14 1
895 81.27 wind 5.0 14400 < th dose independent rect. 14 1
933 81.30 humidity 70.0 43200 < th dose independent rect. 9 1
971 81.33 radiation 20.0 270 < th dose independent rect. 11 1
973 81.33 radiation 10.0 43200 < th dose independent rect. 18 2