Os03g0684100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0684100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.04 | 0.319 | 9.09 | 0.997 | 0.304 | -0.342 | -0.471 | 0.0872 | 0.0963 | 16.1 | 25 | 223 | -- | -- |
| 46.06 | 0.316 | 9.08 | 1.02 | 0.304 | -0.339 | -0.513 | -- | 0.104 | 16.1 | 24.98 | 223 | -- | -- |
| 46.54 | 0.318 | 9.09 | 0.934 | 0.303 | -0.344 | -- | 0.29 | 0.0759 | 16 | 24.92 | 217 | -- | -- |
| 46.8 | 0.319 | 9.08 | 1.02 | 0.309 | -0.328 | -- | -- | 0.107 | 16 | 24.99 | 224 | -- | -- |
| 49.57 | 0.328 | 9.09 | 0.848 | -- | -0.479 | -- | 0.511 | 0.0611 | -- | 25.7 | 176 | -- | -- |
| 51.88 | 0.338 | 9.05 | 1.12 | 0.531 | -- | -0.395 | -- | 0.273 | 16.3 | -- | -- | -- | -- |
| 52.31 | 0.339 | 9.05 | 1.12 | 0.529 | -- | -- | -- | 0.271 | 16.3 | -- | -- | -- | -- |
| 49.93 | 0.329 | 9.09 | 0.975 | -- | -0.467 | -- | -- | 0.0497 | -- | 25.2 | 186 | -- | -- |
| 72.95 | 0.398 | 9.13 | -- | 0.225 | -0.449 | -- | -- | -0.0719 | 16.1 | 24.8 | 236 | -- | -- |
| 67.39 | 0.384 | 9.05 | 1.1 | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
| 85.22 | 0.432 | 9.08 | -- | 0.507 | -- | -- | -- | 0.147 | 16.3 | -- | -- | -- | -- |
| 74.5 | 0.402 | 9.13 | -- | -- | -0.549 | -- | -- | -0.0916 | -- | 25.12 | 190 | -- | -- |
| 99.09 | 0.465 | 9.07 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 2 | 40.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 13 | 41.04 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 12 |
| 23 | 41.47 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 26 | 41.56 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 8 |
| 40 | 41.75 | temperature | 25 | 90 | > th | dose dependent | sin | 7 | NA |
| 42 | 41.85 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 13 |
| 60 | 42.02 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 72 | 42.11 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 17 |
| 79 | 42.19 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 85 | 42.25 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 18 |
| 87 | 42.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 4 |
| 111 | 42.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 17 |
| 130 | 42.58 | wind | 7 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 166 | 42.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 173 | 42.76 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 182 | 42.80 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 195 | 42.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 253 | 43.03 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 7 |
| 396 | 43.40 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 19 |
| 400 | 43.41 | wind | 5 | 90 | < th | dose independent | rect. | 8 | 19 |
| 406 | 43.42 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 15 |
| 426 | 43.49 | wind | 5 | 90 | < th | dose independent | rect. | 8 | 7 |
| 448 | 43.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 450 | 43.53 | wind | 7 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 545 | 43.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 583 | 43.84 | wind | 9 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 647 | 44.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 661 | 44.03 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 668 | 44.04 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 6 |
| 830 | 44.31 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 4 |
| 921 | 44.43 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 6 |
| 956 | 44.49 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 977 | 44.51 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 989 | 44.53 | wind | 1 | 270 | > th | dose dependent | rect. | 10 | 8 |