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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0683800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Proline-rich protein APG-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.23 (0.036) R2 : 0.606
β1 : 1.04 (0.177) R2dD : 0.0564 R2D : -0.145
β2 : 1.42 (0.0821) R2dC : 0.265 R2C : 0.231
β3 : -3.05 (0.187) R2dE : 0.499 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.118 (0.0864) R2dN8 : 0.00292 R2N8 : 0.0245
σ : 0.646
deviance : 192.6
__
_____
C
peak time of C : 0.49
E
wheather : temperature
threshold : 18.9
memory length : 7923
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.63 0.655 5.15 0.773 1.46 -1.97 0.349 2.4 -0.127 0.474 20 3637 -- --
203.27 0.664 5.24 0.695 1.4 -2.62 0.793 -- -0.2 0.0976 19.31 4886 -- --
195.08 0.651 5.15 0.774 1.47 -1.96 -- 2.47 -0.125 0.556 19.96 3683 -- --
192.6 0.646 5.23 1.04 1.42 -3.05 -- -- -0.118 0.49 18.9 7923 -- --
321.38 0.835 5.1 0.85 -- -1.88 -- 2.63 -0.108 -- 19.8 4652 -- --
304.67 0.818 5.38 -0.989 1.37 -- 0.496 -- -0.838 0.461 -- -- -- --
305.65 0.819 5.38 -1.01 1.37 -- -- -- -0.842 0.565 -- -- -- --
319.44 0.832 5.2 0.963 -- -2.92 -- -- -0.116 -- 18.98 7648 -- --
206.33 0.669 5.26 -- 1.44 -2.32 -- -- -0.323 0.55 19 7918 -- --
424.03 0.962 5.35 -0.961 -- -- -- -- -0.818 -- -- -- -- --
332.49 0.853 5.35 -- 1.36 -- -- -- -0.729 0.529 -- -- -- --
332.07 0.849 5.25 -- -- -2.21 -- -- -0.343 -- 19 7589 -- --
448.39 0.988 5.33 -- -- -- -- -- -0.711 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.62 temperature 25 270 < th dose dependent sin 6 NA
2 192.14 temperature 20 720 > th dose independent rect. 22 14
4 192.67 temperature 25 270 < th dose dependent rect. 23 22
11 194.50 temperature 20 720 < th dose independent rect. 19 16
36 195.94 temperature 20 270 > th dose independent sin 5 NA
46 196.45 atmosphere 1015 43200 > th dose dependent rect. 23 1
52 196.86 temperature 25 720 < th dose dependent rect. 18 16
57 196.97 temperature 20 270 < th dose independent sin 6 NA
63 197.06 temperature 20 720 < th dose independent sin 9 NA
83 197.41 atmosphere 1015 43200 > th dose independent rect. 14 10
97 197.57 atmosphere 1015 43200 < th dose independent rect. 12 21
102 197.61 atmosphere 1015 43200 > th dose independent rect. 5 19
104 197.62 atmosphere 1015 43200 < th dose independent rect. 5 19
115 197.66 atmosphere 1015 43200 > th dose independent rect. 12 21
142 197.72 atmosphere 1015 43200 < th dose independent rect. 14 10
153 197.74 atmosphere 1015 43200 > th dose independent sin 16 NA
189 197.80 atmosphere 1015 43200 < th dose independent sin 16 NA
204 197.82 atmosphere 1015 43200 > th dose independent rect. 18 3
336 197.98 temperature 25 720 < th dose dependent sin 11 NA
387 198.06 atmosphere 1015 43200 < th dose independent no NA NA
478 198.18 atmosphere 1015 43200 < th dose independent rect. 22 23
491 198.22 atmosphere 1015 43200 > th dose independent no NA NA
517 198.26 atmosphere 1015 43200 > th dose independent rect. 15 23
540 198.29 atmosphere 1015 43200 > th dose dependent sin 13 NA
582 198.34 temperature 10 270 > th dose dependent sin 6 NA
604 198.38 atmosphere 1015 43200 > th dose independent rect. 22 23
702 198.60 atmosphere 1015 43200 > th dose independent rect. 23 1
718 198.65 atmosphere 1015 43200 < th dose independent rect. 5 1
737 198.69 atmosphere 1015 43200 > th dose independent rect. 5 2
849 198.98 atmosphere 1015 43200 < th dose independent rect. 23 1