Os03g0683300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosome-inactivating protein family protein.
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Os03g0683300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosome-inactivating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.5 | 0.674 | 4.94 | 0.642 | 1.05 | -3.23 | 0.959 | 1.92 | -0.111 | 14.2 | 14.51 | 299 | 16.8 | 18 |
| 194.54 | 0.65 | 4.99 | 0.326 | 0.0575 | -4.25 | 1.33 | -- | -0.209 | 10.8 | 7.642 | 441 | 15.1 | 18.7 |
| 206.8 | 0.67 | 4.94 | 0.727 | 1.08 | -3.18 | -- | 2.02 | -0.0939 | 14.7 | 14.42 | 314 | 16.6 | 18 |
| 198.72 | 0.657 | 4.97 | 0.491 | 0.011 | -4.33 | -- | -- | -0.158 | 22.5 | 7.547 | 441 | 15.1 | 18.8 |
| 231.15 | 0.708 | 4.96 | 1.06 | -- | -3.51 | -- | 2.22 | -0.0251 | -- | 12.87 | 371 | 16.5 | 17.7 |
| 369.53 | 0.901 | 5.08 | -0.144 | 2.16 | -- | 0.119 | -- | -0.602 | 15.6 | -- | -- | -- | -- |
| 369.57 | 0.9 | 5.08 | -0.142 | 2.17 | -- | -- | -- | -0.601 | 15.6 | -- | -- | -- | -- |
| 198.73 | 0.657 | 4.97 | 0.49 | -- | -4.32 | -- | -- | -0.157 | -- | 7.512 | 441 | 15.1 | 18.8 |
| 203.54 | 0.664 | 5 | -- | 0.292 | -4.23 | -- | -- | -0.267 | 16.9 | 6.036 | 437 | 14.8 | 19.3 |
| 630.99 | 1.17 | 5.08 | -0.233 | -- | -- | -- | -- | -0.659 | -- | -- | -- | -- | -- |
| 370.1 | 0.9 | 5.08 | -- | 2.17 | -- | -- | -- | -0.585 | 15.6 | -- | -- | -- | -- |
| 204.24 | 0.666 | 4.98 | -- | -- | -4.41 | -- | -- | -0.236 | -- | 4.517 | 440 | 14.8 | 19.3 |
| 632.43 | 1.17 | 5.07 | -- | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 209.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 3 | 215.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 23 | 230.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 46 | 242.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 51 | 243.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 62 | 245.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 75 | 245.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 83 | 246.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 98 | 246.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 125 | 246.93 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 149 | 247.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 175 | 247.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 183 | 247.71 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 184 | 247.73 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 17 |
| 186 | 247.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 189 | 247.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 203 | 247.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 348 | 250.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 397 | 251.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 437 | 252.33 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 446 | 252.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 452 | 252.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 456 | 252.68 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 516 | 254.22 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 527 | 254.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 552 | 255.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 554 | 255.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 596 | 256.09 | temperature | 15 | 30 | > th | dose dependent | sin | 7 | NA |
| 600 | 256.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 615 | 256.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 630 | 256.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 660 | 257.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 661 | 257.20 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 665 | 257.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 691 | 257.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 19 |
| 715 | 257.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 722 | 258.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 727 | 258.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 747 | 258.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 754 | 258.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 779 | 258.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 780 | 258.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 810 | 259.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 906 | 260.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 928 | 260.25 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 18 |
| 960 | 260.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |