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Os03g0681800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2A, regulatory B subunit, B56 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.68 (0.0202) R2 : 0.186
β1 : 0.755 (0.0741) R2dD : 0.192 R2D : 0.172
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0432) R2dN8 : 0.0141 R2N8 : -0.00653
σ : 0.38
deviance : 66.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.19 0.312 8.5 2.16 0.401 -0.715 -0.61 4.86 0.462 4.54 25.01 1528 -- --
49.81 0.331 8.65 0.884 0.283 -0.73 -0.72 -- 0.193 5.81 11.67 24446 -- --
44.96 0.312 8.5 2.15 0.357 -0.742 -- 5.14 0.469 4.29 24.74 1723 -- --
50.97 0.335 8.65 0.886 0.278 -0.757 -- -- 0.2 6.46 11.67 24446 -- --
50.86 0.332 8.46 2.56 -- -1.07 -- 7.91 0.497 -- 26.19 1817 -- --
55.48 0.349 8.67 0.736 0.428 -- -0.612 -- 0.0906 4.68 -- -- -- --
56.46 0.352 8.67 0.739 0.424 -- -- -- 0.0938 4.68 -- -- -- --
54.73 0.346 8.65 0.916 -- -0.887 -- -- 0.223 -- 7.37 47520 -- --
64.19 0.373 8.72 -- 0.424 0.416 -- -- -0.113 4.73 -5.46 47520 -- --
66.01 0.38 8.68 0.755 -- -- -- -- 0.105 -- -- -- -- --
70.86 0.394 8.69 -- 0.438 -- -- -- 0.0115 4.63 -- -- -- --
67.36 0.382 8.75 -- -- 0.455 -- -- -0.0982 -- 34.84 47427 -- --
81.05 0.42 8.69 -- -- -- -- -- 0.0211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.20 humidity 90.0 14400 > th dose dependent rect. 23 4
3 41.30 humidity 90.0 14400 > th dose dependent rect. 22 7
19 41.83 radiation 1.0 14400 < th dose dependent rect. 18 1
27 41.84 radiation 1.0 14400 < th dose dependent rect. 18 10
33 41.97 radiation 1.0 43200 < th dose independent rect. 18 1
39 41.97 radiation 1.0 43200 < th dose independent rect. 18 7
50 42.01 radiation 1.0 14400 < th dose dependent rect. 18 12
72 42.18 wind 1.0 43200 > th dose independent rect. 19 1
73 42.18 atmosphere 1005.0 43200 > th dose independent rect. 12 1
74 42.18 wind 9.0 43200 > th dose independent rect. 18 2
77 42.22 wind 9.0 43200 < th dose independent rect. 18 2
78 42.22 radiation 40.0 43200 < th dose independent rect. 16 16
80 42.25 radiation 40.0 43200 < th dose independent rect. 6 2
83 42.25 wind 1.0 43200 < th dose dependent rect. 19 2
89 42.27 radiation 40.0 43200 < th dose independent rect. 18 14
91 42.28 radiation 1.0 43200 < th dose independent rect. 4 1
94 42.29 radiation 1.0 43200 > th dose independent rect. 4 1
95 42.29 radiation 10.0 43200 < th dose independent rect. 13 1
106 42.29 wind 1.0 43200 < th dose dependent rect. 21 1
107 42.29 radiation 1.0 43200 > th dose dependent rect. 4 1
137 42.34 radiation 40.0 43200 < th dose independent rect. 21 11
138 42.34 precipitation 0.1 43200 > th dose dependent rect. 20 2
144 42.36 radiation 1.0 43200 < th dose dependent rect. 4 1
149 42.38 humidity 70.0 43200 > th dose independent rect. 8 2
154 42.39 atmosphere 1005.0 43200 < th dose independent rect. 12 1
169 42.44 radiation 1.0 43200 < th dose dependent rect. 21 8
174 42.46 wind 9.0 43200 > th dose dependent rect. 18 2
187 42.48 atmosphere 1005.0 43200 < th dose independent rect. 1 2
207 42.53 atmosphere 1005.0 43200 > th dose independent rect. 23 4
212 42.54 humidity 70.0 43200 < th dose independent rect. 9 1
213 42.54 precipitation 0.1 43200 < th dose independent rect. 20 2
216 42.54 radiation 1.0 43200 < th dose independent rect. 21 8
219 42.54 precipitation 0.1 43200 < th dose dependent rect. 20 2
224 42.55 humidity 70.0 43200 < th dose independent rect. 8 3
228 42.56 precipitation 0.1 43200 > th dose independent rect. 20 2
244 42.58 atmosphere 1005.0 43200 > th dose independent rect. 1 1
247 42.59 wind 9.0 43200 > th dose independent rect. 24 1
248 42.59 humidity 80.0 43200 > th dose independent rect. 17 1
255 42.59 wind 9.0 43200 > th dose dependent rect. 24 1
262 42.61 humidity 60.0 43200 > th dose independent rect. 11 1
263 42.61 humidity 80.0 43200 < th dose independent rect. 17 1
269 42.62 wind 1.0 43200 > th dose independent rect. 21 1
277 42.63 radiation 10.0 43200 < th dose independent rect. 10 4
309 42.69 atmosphere 1010.0 43200 < th dose dependent rect. 6 1
324 42.72 wind 1.0 43200 < th dose independent rect. 19 1
341 42.74 atmosphere 1005.0 43200 > th dose independent rect. 11 16
342 42.74 atmosphere 1005.0 43200 > th dose independent rect. 11 19
346 42.75 radiation 10.0 43200 < th dose independent rect. 10 1
352 42.75 atmosphere 1005.0 43200 < th dose independent rect. 18 9
357 42.76 temperature 25.0 1440 < th dose independent rect. 16 4
360 42.76 atmosphere 1005.0 43200 > th dose independent rect. 16 11
369 42.77 wind 1.0 43200 < th dose independent rect. 21 1
372 42.77 atmosphere 1005.0 43200 < th dose independent rect. 16 11
375 42.77 atmosphere 1005.0 43200 > th dose independent rect. 16 13
380 42.77 atmosphere 1005.0 43200 < th dose independent rect. 11 16
383 42.77 atmosphere 1005.0 43200 < th dose independent rect. 11 18
389 42.78 atmosphere 1005.0 43200 > th dose independent sin 13 NA
390 42.78 atmosphere 1005.0 43200 < th dose independent sin 12 NA
392 42.78 radiation 40.0 43200 > th dose independent rect. 11 1
403 42.78 atmosphere 1005.0 43200 > th dose independent rect. 18 12
414 42.78 radiation 1.0 43200 > th dose dependent rect. 10 1
418 42.79 humidity 90.0 43200 < th dose independent rect. 19 2
442 42.79 atmosphere 1005.0 43200 > th dose independent rect. 21 20
448 42.79 wind 3.0 43200 > th dose dependent rect. 14 1
454 42.80 wind 5.0 43200 < th dose independent rect. 14 1
475 42.80 atmosphere 1005.0 43200 < th dose independent rect. 22 19
512 42.81 humidity 90.0 14400 > th dose dependent rect. 4 2
516 42.82 precipitation 0.1 43200 > th dose independent rect. 18 1
539 42.82 atmosphere 1005.0 43200 > th dose independent rect. 16 22
543 42.82 atmosphere 1005.0 43200 < th dose independent rect. 7 22
575 42.83 atmosphere 1005.0 43200 > th dose independent rect. 21 17
594 42.83 atmosphere 1005.0 43200 < th dose independent rect. 16 21
595 42.83 atmosphere 1005.0 43200 > th dose independent rect. 5 22
614 42.84 atmosphere 1005.0 43200 > th dose independent no NA NA
615 42.84 wind 5.0 43200 > th dose independent rect. 14 1
638 42.84 atmosphere 1005.0 43200 > th dose independent rect. 18 20
666 42.85 atmosphere 1005.0 43200 < th dose independent no NA NA
685 42.85 atmosphere 1005.0 43200 < th dose independent rect. 18 20
704 42.85 precipitation 0.1 43200 > th dose dependent rect. 18 1
712 42.86 temperature 25.0 1440 > th dose independent rect. 16 4
714 42.86 humidity 90.0 14400 > th dose independent rect. 23 5
745 42.86 atmosphere 1005.0 43200 > th dose independent rect. 24 23
747 42.86 atmosphere 1005.0 43200 < th dose independent rect. 24 23
809 42.88 radiation 1.0 43200 < th dose independent rect. 7 1
810 42.88 precipitation 0.1 43200 < th dose independent rect. 18 1
848 42.88 precipitation 0.1 43200 < th dose dependent rect. 18 1
856 42.89 radiation 1.0 43200 > th dose independent rect. 7 1
902 42.90 radiation 40.0 43200 < th dose independent rect. 15 8
940 42.91 wind 1.0 43200 < th dose independent rect. 19 3
943 42.91 radiation 40.0 43200 < th dose independent rect. 15 5