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Os03g0681300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SABRE.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0179) R2 : 0.173
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.368 (0.0378) R2dN8 : 0.223 R2N8 : 0.173
σ : 0.338
deviance : 52.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.77 0.204 11 0.429 0.522 -0.666 -0.407 -0.0256 0.324 2.18 22.86 569 -- --
18.76 0.202 11 0.426 0.525 -0.675 -0.408 -- 0.325 2.17 22.7 547 -- --
19.37 0.205 11 0.428 0.518 -0.669 -- 0.0469 0.325 2.21 22.7 586 -- --
19.37 0.205 11 0.434 0.518 -0.678 -- -- 0.326 2.22 22.69 585 -- --
33.4 0.269 11 0.377 -- -0.732 -- 0.154 0.271 -- 25.19 960 -- --
24.04 0.23 11 0.588 0.535 -- -0.429 -- 0.423 1.76 -- -- -- --
24.76 0.233 11 0.602 0.535 -- -- -- 0.425 1.78 -- -- -- --
33.42 0.269 11 0.403 -- -0.747 -- -- 0.278 -- 25.11 961 -- --
23.22 0.224 11 -- 0.503 -0.866 -- -- 0.261 1.93 20.76 2249 -- --
42.13 0.303 11 0.624 -- -- -- -- 0.437 -- -- -- -- --
34.3 0.274 11 -- 0.546 -- -- -- 0.358 1.81 -- -- -- --
36.78 0.282 11 -- -- -1.07 -- -- 0.244 -- 22.45 954 -- --
52.39 0.338 11 -- -- -- -- -- 0.368 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.80 temperature 20.0 270 > th dose independent rect. 12 19
4 18.09 temperature 20.0 30 > th dose independent rect. 12 21
19 18.53 humidity 70.0 270 > th dose dependent rect. 1 6
23 18.60 atmosphere 1010.0 270 < th dose independent rect. 12 18
27 18.62 atmosphere 1010.0 270 < th dose independent rect. 11 20
46 18.83 temperature 30.0 270 < th dose dependent rect. 6 19
47 18.85 humidity 90.0 270 > th dose independent rect. 1 6
48 18.85 temperature 20.0 270 > th dose independent rect. 2 15
53 18.87 atmosphere 1010.0 270 < th dose independent rect. 11 10
72 18.98 temperature 20.0 30 > th dose independent rect. 12 23
89 19.06 temperature 20.0 270 > th dose independent rect. 1 6
109 19.15 atmosphere 995.0 270 > th dose independent rect. 12 18
114 19.18 humidity 50.0 270 > th dose independent rect. 6 6
120 19.20 temperature 10.0 270 > th dose independent rect. 6 6
121 19.20 atmosphere 995.0 270 > th dose independent rect. 6 6
122 19.20 atmosphere 1015.0 270 < th dose independent rect. 6 6
123 19.20 wind 7.0 270 < th dose independent rect. 17 9
127 19.21 precipitation 0.1 270 < th dose independent rect. 6 6
129 19.21 precipitation 0.1 270 < th dose dependent rect. 6 6
130 19.21 temperature 10.0 270 > th dose dependent rect. 12 18
134 19.22 temperature 10.0 270 > th dose dependent rect. 1 6
152 19.28 radiation 20.0 270 < th dose dependent rect. 1 6
161 19.30 wind 9.0 270 < th dose independent rect. 6 6
162 19.30 radiation 10.0 270 < th dose independent rect. 1 6
172 19.32 atmosphere 1010.0 270 < th dose independent rect. 1 6
175 19.32 atmosphere 1015.0 270 < th dose dependent rect. 1 5
180 19.33 temperature 30.0 270 < th dose dependent rect. 7 4
182 19.33 atmosphere 1015.0 270 < th dose dependent rect. 12 18
194 19.36 precipitation 0.1 270 < th dose independent rect. 7 18
196 19.36 precipitation 0.1 270 < th dose dependent rect. 7 18
198 19.37 temperature 20.0 270 > th dose independent rect. 11 9
199 19.37 wind 9.0 270 < th dose independent rect. 12 18
204 19.38 wind 9.0 270 < th dose independent rect. 1 6
205 19.38 temperature 10.0 270 > th dose independent rect. 1 6
207 19.38 temperature 30.0 270 < th dose independent rect. 1 6
208 19.38 humidity 50.0 270 > th dose independent rect. 1 6
210 19.38 atmosphere 995.0 270 > th dose independent rect. 1 6
215 19.38 temperature 10.0 270 > th dose independent rect. 7 18
219 19.39 wind 9.0 270 < th dose independent rect. 7 18
234 19.42 temperature 10.0 270 > th dose dependent rect. 2 15
240 19.43 atmosphere 1010.0 270 < th dose independent rect. 1 17
244 19.43 temperature 30.0 270 < th dose dependent rect. 19 17
256 19.46 precipitation 0.1 270 < th dose independent rect. 12 18
257 19.46 precipitation 0.1 270 < th dose dependent rect. 12 18
261 19.47 temperature 15.0 1440 > th dose independent rect. 4 5
277 19.47 temperature 20.0 1440 < th dose dependent rect. 3 2
289 19.48 radiation 1.0 270 > th dose independent rect. 6 6
298 19.49 wind 1.0 270 > th dose independent rect. 6 6
306 19.50 atmosphere 1010.0 270 < th dose independent rect. 23 8
310 19.50 temperature 30.0 270 < th dose dependent rect. 6 6
324 19.51 atmosphere 1015.0 90 < th dose dependent rect. 15 17
327 19.52 precipitation 0.1 270 < th dose independent rect. 1 6
333 19.52 precipitation 0.1 270 < th dose dependent rect. 1 6
347 19.54 temperature 20.0 1440 < th dose dependent rect. 21 18
353 19.55 wind 1.0 270 > th dose independent rect. 7 18
360 19.55 temperature 20.0 720 < th dose dependent rect. 17 12
364 19.55 atmosphere 1015.0 10 < th dose dependent rect. 15 17
380 19.56 temperature 20.0 1440 < th dose dependent rect. 23 15
395 19.57 temperature 20.0 720 < th dose dependent sin 13 NA
396 19.57 temperature 20.0 1440 < th dose dependent sin 6 NA
399 19.57 temperature 20.0 1440 < th dose dependent rect. 2 12
460 19.59 temperature 20.0 720 < th dose dependent rect. 9 20
484 19.60 temperature 20.0 1440 < th dose dependent rect. 2 8
530 19.62 temperature 20.0 720 > th dose independent rect. 18 21
565 19.63 temperature 20.0 1440 < th dose dependent rect. 23 7
578 19.63 temperature 10.0 30 > th dose dependent rect. 12 20
588 19.64 temperature 25.0 720 < th dose dependent no NA NA
606 19.64 temperature 25.0 720 < th dose dependent rect. 13 23
616 19.65 precipitation 0.1 270 < th dose independent rect. 17 9
618 19.65 temperature 20.0 720 > th dose independent rect. 1 23
628 19.65 precipitation 0.1 270 < th dose dependent rect. 17 9
650 19.66 radiation 10.0 270 < th dose independent rect. 17 9
651 19.66 atmosphere 995.0 270 > th dose independent rect. 2 15
661 19.66 atmosphere 995.0 270 > th dose dependent rect. 17 9
675 19.66 temperature 20.0 1440 < th dose dependent rect. 2 22
767 19.69 wind 1.0 270 > th dose independent rect. 19 17
768 19.69 precipitation 0.1 270 < th dose independent rect. 19 17
782 19.69 precipitation 0.1 270 < th dose dependent rect. 19 17
803 19.70 temperature 30.0 270 < th dose independent rect. 6 6
805 19.70 temperature 10.0 270 > th dose independent rect. 17 9
928 19.73 radiation 40.0 270 < th dose dependent rect. 17 9
961 19.74 atmosphere 995.0 270 > th dose independent rect. 12 8