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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0680500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.024) R2 : 0.000944
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0331 (0.0505) R2dN8 : 0.00122 R2N8 : 0.000944
σ : 0.451
deviance : 93.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.32 0.444 2.86 0.0409 0.169 0.248 -0.0735 -0.302 0.164 14 24.99 270 -- --
89.61 0.441 2.86 -0.0255 0.176 0.234 0.0301 -- 0.148 13.7 25 255 -- --
89.34 0.44 2.86 0.0384 0.172 0.247 -- -0.295 0.166 13.9 25 254 -- --
89.57 0.441 2.87 -0.049 0.165 0.235 -- -- 0.133 13.9 24.95 272 -- --
90.61 0.443 2.86 0.0335 -- 0.243 -- -0.347 0.163 -- 25 491 -- --
92.18 0.45 2.89 -0.119 0.129 -- -0.0277 -- 0.0195 9.69 -- -- -- --
92.18 0.45 2.89 -0.12 0.129 -- -- -- 0.0195 9.68 -- -- -- --
90.79 0.444 2.87 -0.063 -- 0.204 -- -- 0.105 -- 24.92 449 -- --
89.63 0.441 2.86 -- 0.169 0.238 -- -- 0.14 13.9 25 272 -- --
93.17 0.451 2.89 -0.121 -- -- -- -- 0.0197 -- -- -- -- --
92.56 0.45 2.89 -- 0.129 -- -- -- 0.0328 9.75 -- -- -- --
90.89 0.444 2.87 -- -- 0.21 -- -- 0.116 -- 24.97 449 -- --
93.56 0.451 2.89 -- -- -- -- -- 0.0331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.13 radiation 10.0 10 > th dose independent rect. 6 1
27 80.13 radiation 10.0 10 > th dose dependent rect. 6 1
57 83.64 wind 3.0 10 < th dose dependent rect. 6 1
59 84.32 atmosphere 1005.0 10 > th dose dependent rect. 6 1
61 84.34 humidity 80.0 30 > th dose dependent rect. 6 1
64 85.06 temperature 30.0 30 < th dose dependent rect. 6 1
68 85.76 radiation 10.0 10 < th dose dependent rect. 6 1
77 86.23 wind 1.0 10 < th dose independent rect. 6 1
89 86.62 atmosphere 1010.0 10 < th dose independent rect. 24 11
91 86.68 temperature 20.0 10 > th dose independent rect. 6 1
92 86.70 atmosphere 1010.0 10 < th dose independent rect. 18 17
95 86.80 humidity 80.0 10 > th dose independent rect. 6 1
97 86.89 atmosphere 1010.0 10 < th dose independent rect. 22 13
103 86.92 temperature 10.0 10 > th dose independent rect. 6 1
105 86.92 temperature 30.0 10 < th dose independent rect. 6 1
106 86.92 humidity 50.0 10 > th dose independent rect. 6 1
109 86.92 atmosphere 995.0 10 > th dose independent rect. 6 1
111 86.92 atmosphere 1015.0 10 < th dose independent rect. 6 1
112 86.92 radiation 20.0 10 < th dose independent rect. 6 1
115 86.92 precipitation 0.1 10 < th dose independent rect. 6 1
116 86.92 temperature 10.0 10 > th dose independent rect. 7 23
117 86.92 precipitation 0.1 10 < th dose dependent rect. 6 1
119 86.94 wind 1.0 30 > th dose independent rect. 6 1
139 87.04 atmosphere 1010.0 10 < th dose independent rect. 13 22
141 87.08 wind 9.0 1440 < th dose independent rect. 7 1
142 87.08 temperature 10.0 1440 > th dose independent rect. 7 1
146 87.08 temperature 30.0 1440 < th dose independent rect. 7 1
150 87.08 humidity 50.0 1440 > th dose independent rect. 7 1
155 87.08 atmosphere 995.0 1440 > th dose independent rect. 7 1
156 87.08 atmosphere 1015.0 1440 < th dose independent rect. 7 1
158 87.08 temperature 10.0 1440 > th dose independent rect. 8 23
163 87.13 humidity 90.0 30 < th dose independent rect. 6 1
164 87.14 atmosphere 1000.0 10 > th dose independent rect. 7 23
181 87.22 atmosphere 1010.0 10 < th dose independent sin 8 NA
183 87.23 atmosphere 1015.0 30 < th dose independent rect. 7 23
200 87.34 wind 9.0 30 < th dose independent rect. 7 23
203 87.41 temperature 10.0 10 > th dose dependent rect. 6 1
208 87.49 precipitation 0.1 30 < th dose independent rect. 7 23
209 87.49 precipitation 0.1 30 < th dose dependent rect. 7 23
220 87.70 radiation 1.0 10 < th dose independent rect. 7 5
223 87.70 radiation 1.0 10 < th dose dependent rect. 7 5
225 87.73 radiation 1.0 90 < th dose independent rect. 10 1
228 87.73 radiation 1.0 90 < th dose dependent rect. 10 1
231 87.75 radiation 20.0 90 < th dose independent rect. 10 21
250 87.94 humidity 60.0 30 > th dose independent rect. 11 20
252 88.01 humidity 80.0 90 > th dose independent rect. 11 1
253 88.01 temperature 30.0 30 < th dose independent rect. 7 23
267 88.13 humidity 50.0 30 > th dose dependent rect. 11 20
270 88.15 wind 3.0 30 < th dose dependent rect. 4 3
271 88.17 radiation 10.0 10 < th dose dependent rect. 11 1
276 88.21 radiation 20.0 10 < th dose dependent rect. 6 7
285 88.30 atmosphere 1015.0 720 < th dose independent rect. 7 17
293 88.36 humidity 50.0 4320 < th dose dependent rect. 12 1
305 88.45 humidity 80.0 90 > th dose independent rect. 10 21
309 88.49 radiation 40.0 10 < th dose dependent rect. 11 20
312 88.52 radiation 40.0 90 < th dose dependent rect. 10 21
320 88.58 temperature 25.0 270 < th dose independent rect. 8 22
327 88.63 radiation 20.0 90 < th dose independent rect. 10 1
335 88.65 atmosphere 995.0 30 > th dose dependent rect. 11 20
336 88.66 humidity 80.0 30 > th dose independent rect. 15 16
341 88.68 atmosphere 1010.0 10 < th dose independent rect. 6 5
344 88.69 atmosphere 1015.0 720 < th dose independent rect. 21 22
345 88.70 atmosphere 1005.0 10 > th dose independent rect. 11 2
347 88.70 atmosphere 1015.0 10 < th dose independent rect. 5 23
353 88.72 atmosphere 1015.0 10 < th dose dependent rect. 6 1
354 88.72 temperature 10.0 30 > th dose dependent rect. 7 23
359 88.74 humidity 50.0 90 > th dose dependent rect. 15 16
384 88.82 temperature 10.0 10 > th dose dependent rect. 7 21
418 88.94 humidity 90.0 10 < th dose dependent rect. 6 1
421 88.95 radiation 1.0 1440 > th dose independent rect. 8 4
423 88.95 wind 3.0 90 < th dose independent rect. 7 22
438 88.98 humidity 50.0 30 > th dose independent rect. 7 23
442 89.00 humidity 50.0 1440 > th dose independent rect. 8 3
449 89.01 radiation 10.0 10 > th dose independent rect. 13 22
455 89.03 temperature 25.0 270 > th dose independent rect. 12 22
458 89.04 temperature 10.0 1440 > th dose independent rect. 8 4
461 89.04 atmosphere 995.0 1440 > th dose independent rect. 8 4
465 89.04 temperature 10.0 1440 > th dose independent rect. 12 20
476 89.07 radiation 1.0 90 > th dose independent rect. 10 21
479 89.08 atmosphere 1010.0 720 < th dose independent rect. 22 1
480 89.08 radiation 1.0 10 < th dose independent rect. 11 1
516 89.08 temperature 10.0 30 > th dose dependent rect. 7 16
521 89.10 wind 7.0 30 < th dose independent rect. 7 4
522 89.10 atmosphere 1015.0 720 < th dose independent rect. 21 14
526 89.11 radiation 20.0 10 < th dose independent rect. 10 2
534 89.12 precipitation 0.1 30 < th dose independent rect. 11 20
536 89.12 precipitation 0.1 30 < th dose dependent rect. 11 20
541 89.13 humidity 70.0 30 > th dose dependent rect. 12 1
547 89.14 temperature 10.0 30 > th dose independent rect. 7 4
549 89.14 humidity 50.0 30 > th dose independent rect. 7 4
550 89.14 atmosphere 995.0 30 > th dose independent rect. 7 4
553 89.14 precipitation 0.1 30 < th dose independent rect. 7 4
554 89.14 temperature 10.0 30 > th dose independent rect. 11 20
557 89.14 atmosphere 1015.0 720 < th dose independent rect. 12 23
559 89.14 precipitation 0.1 30 < th dose dependent rect. 7 4
561 89.15 wind 3.0 30 < th dose independent rect. 4 3
563 89.15 atmosphere 1015.0 720 < th dose independent rect. 18 16
568 89.15 wind 9.0 30 < th dose dependent rect. 7 4
569 89.15 temperature 10.0 30 > th dose dependent rect. 7 4
572 89.17 humidity 60.0 30 > th dose independent rect. 11 7
607 89.19 temperature 25.0 270 < th dose independent rect. 19 22
611 89.20 humidity 80.0 30 > th dose independent rect. 15 22
618 89.21 atmosphere 1015.0 720 < th dose independent rect. 15 9
619 89.21 atmosphere 1015.0 90 < th dose independent rect. 13 14
620 89.21 atmosphere 1015.0 720 < th dose independent rect. 12 15
624 89.21 temperature 10.0 30 > th dose dependent rect. 7 13
627 89.22 wind 1.0 30 > th dose independent rect. 7 4
629 89.22 radiation 20.0 90 < th dose independent rect. 5 8
632 89.22 atmosphere 995.0 30 > th dose independent rect. 11 20
636 89.23 radiation 1.0 30 > th dose independent rect. 7 4
638 89.23 wind 9.0 30 < th dose independent rect. 11 20
650 89.24 atmosphere 1005.0 30 > th dose dependent rect. 1 6
676 89.28 radiation 10.0 10 < th dose independent rect. 6 12
685 89.29 temperature 25.0 270 < th dose independent rect. 13 23
689 89.30 humidity 80.0 30 < th dose independent rect. 13 22
690 89.30 temperature 25.0 270 < th dose independent rect. 1 23
696 89.30 radiation 10.0 90 > th dose dependent rect. 13 22
709 89.32 temperature 25.0 270 < th dose independent no NA NA
725 89.33 radiation 20.0 10 < th dose dependent rect. 6 12
736 89.34 atmosphere 1015.0 270 < th dose independent rect. 4 23
740 89.34 wind 5.0 90 < th dose dependent rect. 7 22
743 89.35 temperature 30.0 30 < th dose independent rect. 7 4
750 89.35 humidity 80.0 10 > th dose independent rect. 4 22
761 89.36 atmosphere 1015.0 720 < th dose independent rect. 13 12
763 89.36 radiation 20.0 90 < th dose independent rect. 19 23
770 89.36 wind 9.0 90 < th dose dependent rect. 7 22
772 89.37 humidity 60.0 30 > th dose independent rect. 11 2
774 89.37 atmosphere 1015.0 720 < th dose independent rect. 21 8
776 89.37 radiation 20.0 90 < th dose independent rect. 5 12
800 89.38 radiation 1.0 10 > th dose independent rect. 7 9
811 89.39 humidity 80.0 10 > th dose independent rect. 4 15
817 89.39 atmosphere 1015.0 30 < th dose independent rect. 7 21
820 89.39 temperature 25.0 4320 > th dose dependent rect. 7 1
840 89.41 temperature 25.0 270 > th dose independent no NA NA
848 89.41 radiation 20.0 90 > th dose independent rect. 13 22
853 89.42 humidity 50.0 1440 < th dose independent rect. 9 1
893 89.42 temperature 25.0 270 > th dose independent rect. 17 23
894 89.42 humidity 50.0 1440 < th dose dependent rect. 9 1
941 89.44 atmosphere 1015.0 1440 > th dose independent rect. 23 2
962 89.45 atmosphere 1015.0 720 > th dose independent rect. 3 19
965 89.45 temperature 25.0 270 > th dose independent rect. 22 23
966 89.45 temperature 25.0 270 > th dose independent rect. 24 23
967 89.45 temperature 25.0 270 < th dose independent rect. 22 23
969 89.45 atmosphere 1015.0 720 > th dose dependent sin 19 NA
976 89.45 atmosphere 1015.0 720 > th dose dependent rect. 2 22
996 89.46 atmosphere 1015.0 720 > th dose dependent rect. 21 4